PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G200700.1.p
Common NameSb04g024690, SORBIDRAFT_04g024690
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 311aa    MW: 33097.1 Da    PI: 7.1507
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G200700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-174292256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                          +y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g+
  Sobic.004G200700.1.p 42 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDIAARAMRGN 92
                          69*******.**********84....35999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.39E-284199No hitNo description
SMARTSM003801.1E-3342105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-304299IPR001471AP2/ERF domain
PfamPF008473.2E-104291IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-214299IPR016177DNA-binding domain
PROSITE profilePS5103222.9584299IPR001471AP2/ERF domain
PRINTSPR003673.2E-94354IPR001471AP2/ERF domain
PRINTSPR003673.2E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEDVANAHLY AHAHAHRSKR PPSSAAMKDG DGDVDLSMKG ARYRGVRRRP WGRFAAEIRD  60
PMSKERRWLG TFDTAEQAAC AYDIAARAMR GNKARTNFPG HATAGYWPWG TPQPAAVAVA  120
HPININPLLL HNLIMSSSHH GCRLLNQAGH GHGHGHGHSV PTRPPAPAPA TDDTTIAGPF  180
PVASHPDVVA MDEDVDDWDG VLRSEPADAG LLQDALHDFY PFTRPRAGGD GRRGLSAAGA  240
DDARAAAAAL VPVMQEGFVF PSPFAGVDGN GEYPMMPQGL LEDVIPHSPA FLEVVAAPSV  300
SVPTRRGRRG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1939105269ATERF1
3gcc_A4e-1939105269ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G200700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452378.10.0ethylene-responsive transcription factor ABI4
TrEMBLC5XWH60.0C5XWH6_SORBI; Uncharacterized protein
STRINGSb04g024690.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.13e-21ERF family protein