PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G191700.1.p | ||||||||
Common Name | Sb04g023990, SORBIDRAFT_04g023990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 38945.8 Da PI: 7.1253 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.9 | 8e-53 | 19 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeel+++yL++k+++ ++ +++ +d++k+ePwdLp +++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd Sobic.004G191700.1.p 19 LPPGFRFHPTDEELITHYLARKAADPRFAP-RAVGVADLNKCEPWDLPYRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKD 106 79*************************888.789999***********9888999********************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+++ +++lvglkktLvfy+grap+g kt Wvmheyrl Sobic.004G191700.1.p 107 REIFR-GKALVGLKKTLVFYTGRAPRGGKTGWVMHEYRL 144 *****.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-63 | 8 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.55 | 19 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-29 | 20 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MEHDVHHHHH QQPEEAMELP PGFRFHPTDE ELITHYLARK AADPRFAPRA VGVADLNKCE 60 PWDLPYRATM GEKEWYFFCV KDRKYPTGLR TNRATESGYW KATGKDREIF RGKALVGLKK 120 TLVFYTGRAP RGGKTGWVMH EYRLHGKHAA AAAAASSSSS LIPSVRAGAS KDDWVLCRVF 180 KKSIEPPSSV AGGSKRSSSS VACMGMEDVV GPSRSMADDF AASTLPPLMD VSGGSGGNMS 240 LSAAAAAAAS IELTTPPAPH VTCFSNTLEG HFLTPPTCLL PSAAATASPF LASMAQYDGD 300 AGVGGMVHEL LQEAGGWYSK LGERERLSGG ASQDTGVTSE VNPAEISSTR HHMDHEASFW 360 GF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-56 | 13 | 183 | 11 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-56 | 13 | 183 | 11 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-56 | 13 | 183 | 11 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-56 | 13 | 183 | 11 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-56 | 13 | 183 | 11 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-56 | 13 | 183 | 11 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.992 | 0.0 | callus| leaf| root| shoot |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G191700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065898 | 0.0 | BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds. | |||
GenBank | KJ728021 | 0.0 | KJ728021.1 Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452340.1 | 0.0 | NAC domain-containing protein 79 | ||||
Refseq | XP_021314112.1 | 0.0 | NAC domain-containing protein 79 | ||||
TrEMBL | C5XVR3 | 0.0 | C5XVR3_SORBI; Uncharacterized protein | ||||
STRING | Sb04g023990.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2730 | 37 | 87 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 3e-82 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G191700.1.p |
Entrez Gene | 8070554 |