PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G188300.2.p
Common NameSb04g023670, SORBIDRAFT_04g023670
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 365aa    MW: 38776.7 Da    PI: 6.9658
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G188300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.8e-07148169223
                           EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                            C++Cgk F+r  nL+ H+r H
  Sobic.004G188300.2.p 148 FCEICGKGFRRDANLRMHMRAH 169
                           6*******************99 PP
2zf-C2H212.50.00044238262123
                           EEETTTT..EEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                           y C+ Cg  k+F    +L++H+r +
  Sobic.004G188300.2.p 238 YACERCGgkKRFAVLADLRSHLRHC 262
                           89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.04E-6144169No hitNo description
Gene3DG3DSA:3.30.160.606.1E-6147169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0017147169IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.676147169IPR007087Zinc finger, C2H2
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
SMARTSM0035576200233IPR015880Zinc finger, C2H2-like
SMARTSM0035517238261IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MPGGELADAI MGGGGGGGAD GDPRAALLRL AALGDRMAAV RGRISASISG EARPLSYADI  60
QSVSSEISSA AQLVVLNAAE LLACSVPFPA PLPPPPSAAP SPAPVREIPA VAASVQEQQP  120
LEAAKGDGGG YEVVELDAAE LLAEHVHFCE ICGKGFRRDA NLRMHMRAHG DRFKTLDALS  180
RPGHGHGQPP KLPAGSNVRF SCPFAGCNRN RAHRRFRPLK SAVCARNHFR RSHCPKLYAC  240
ERCGGKKRFA VLADLRSHLR HCGEEAQWRC SCGTTFSRKD KLFGHLALFE GHTPAITKPN  300
KDVVTGPTES TIDAMEEGGF EEGNPDREED EEGGYDPEFF KEWMEELRGG ASGSNWPGPA  360
AAGQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.45050.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G188300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279970.0KJ727997.1 Zea mays clone pUT6118 C2H2 transcription factor (C2H3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454046.10.0uncharacterized protein LOC8068935
RefseqXP_021314916.10.0uncharacterized protein LOC8068935
TrEMBLA0A1Z5RND60.0A0A1Z5RND6_SORBI; Uncharacterized protein
STRINGSb04g023670.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-71C2H2 family protein