PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G188300.1.p | ||||||||
Common Name | Sb04g023670, SORBIDRAFT_04g023670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 365aa MW: 38776.7 Da PI: 6.9658 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.1 | 3.8e-07 | 148 | 169 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Sobic.004G188300.1.p 148 FCEICGKGFRRDANLRMHMRAH 169 6*******************99 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00044 | 238 | 262 | 1 | 23 |
EEETTTT..EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg..ksFsrksnLkrHirtH 23 y C+ Cg k+F +L++H+r + Sobic.004G188300.1.p 238 YACERCGgkKRFAVLADLRSHLRHC 262 89********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.04E-6 | 144 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.1E-6 | 147 | 169 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0017 | 147 | 169 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.676 | 147 | 169 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 149 | 169 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 76 | 200 | 233 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 17 | 238 | 261 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MPGGELADAI MGGGGGGGAD GDPRAALLRL AALGDRMAAV RGRISASISG EARPLSYADI 60 QSVSSEISSA AQLVVLNAAE LLACSVPFPA PLPPPPSAAP SPAPVREIPA VAASVQEQQP 120 LEAAKGDGGG YEVVELDAAE LLAEHVHFCE ICGKGFRRDA NLRMHMRAHG DRFKTLDALS 180 RPGHGHGQPP KLPAGSNVRF SCPFAGCNRN RAHRRFRPLK SAVCARNHFR RSHCPKLYAC 240 ERCGGKKRFA VLADLRSHLR HCGEEAQWRC SCGTTFSRKD KLFGHLALFE GHTPAITKPN 300 KDVVTGPTES TIDAMEEGGF EEGNPDREED EEGGYDPEFF KEWMEELRGG ASGSNWPGPA 360 AAGQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.4505 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G188300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727997 | 0.0 | KJ727997.1 Zea mays clone pUT6118 C2H2 transcription factor (C2H3) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454046.1 | 0.0 | uncharacterized protein LOC8068935 | ||||
Refseq | XP_021314916.1 | 0.0 | uncharacterized protein LOC8068935 | ||||
TrEMBL | A0A1Z5RND6 | 0.0 | A0A1Z5RND6_SORBI; Uncharacterized protein | ||||
STRING | Sb04g023670.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12550 | 32 | 36 | Representative plant | OGRP830 | 16 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 2e-71 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G188300.1.p |
Entrez Gene | 8068935 |