PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.004G171300.1.p | ||||||||
Common Name | Sb04g022245, SORBIDRAFT_04g022245 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 279aa MW: 29225.3 Da PI: 10.1587 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 129 | 177 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f t+e+Aa+a++aa+++++g Sobic.004G171300.1.p 129 YRGVRRRP-WGKWAAEIRDPK----KaARVWLGTFVTPEDAARAYDAAALRIRG 177 9*******.**********94....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.08 | 128 | 185 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-37 | 128 | 191 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.4E-14 | 128 | 177 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 128 | 186 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.63E-21 | 129 | 187 | No hit | No description |
SuperFamily | SSF54171 | 3.14E-22 | 129 | 186 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.5E-14 | 129 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-14 | 167 | 187 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MRPPPPCPPA PTAAALREAM ETAAIVAALT HVIAGGRAET LTQTPPPPCP WASLGYRCHH 60 ENVGPASCQG ETGTTSPPPA NMVSGTSVRF PAPAPVASPG WWMLTCFSIF AVERRVAPAP 120 PPPPSQRSYR GVRRRPWGKW AAEIRDPKKA ARVWLGTFVT PEDAARAYDA AALRIRGSRA 180 KLNFPEDASS LRRRPPVAVG SSPQSRSRLD LDLDGTATTG RSPSCLEMMY AGTGTDAFMV 240 GGGNNGRFLG SWSIGTSSPS HKPVCSSAPV VVAPAAAE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-23 | 127 | 190 | 4 | 68 | ATERF1 |
3gcc_A | 4e-23 | 127 | 190 | 4 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.004G171300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP005611 | 4e-51 | AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21. | |||
GenBank | AP014958 | 4e-51 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002453961.2 | 0.0 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A194YQ52 | 0.0 | A0A194YQ52_SORBI; Uncharacterized protein | ||||
STRING | Sb04g022245.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15038 | 11 | 20 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72360.1 | 1e-24 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.004G171300.1.p |
Entrez Gene | 8061040 |