PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G168800.1.p

Common Name

Sb04g022020, SORBIDRAFT_04g022020

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 324aa MW: 34942 Da PI: 6.3615

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G168800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.6	5.4e-08	189	238	14	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R + +rsR RK+++i+eLe+ v++L++ +L+ ++++l ++ ++l +e+ Sobic.004G168800.1.p 189 RRSGQRSRVRKLQYIAELERTVDSLQNMGADLAVRVSSLFQLHSALSMEN 238 67889**********************************99999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	1.91E-16	188	231	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-5	189	248	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MSRSPHLPPR CPPLGPQITR RDDSMFTQSC RFPSGDPFFG EPPCWLDDLL ADSGKAPKLP 60 PLRRACSDSD AILDALSTFQ SPIYPIEEGD LNSGGEGEDL LDAGEGGESG SVVEACCVYG 120 PNSPRQKSRL TSSESSMVNA VLENVPSNPL QYLTIDASSG VNGNVASGTA DASDAFGFGH 180 PDQDKSFKRR SGQRSRVRKL QYIAELERTV DSLQNMGADL AVRVSSLFQL HSALSMENKQ 240 LRMQISSLQH AKLIKDGQTQ ALKNEAERLK QMSARHRRSR SVTSCYDPTS FGADASAVNW 300 QMPDMGRLSL NGSSVSPRGG YGL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	194	RRSGQRS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.12973	0.0	pollen

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G168800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT068415	0.0	BT068415.1 Zea mays full-length cDNA clone ZM_BFb0176P14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002453946.1	0.0	basic leucine zipper 19
TrEMBL	C5XU18	0.0	C5XU18_SORBI; Uncharacterized protein
STRING	Sb04g022020.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8137	26	31
Representative plant	OGRP9737	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	4e-17	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.004G168800.1.p
Entrez Gene	8064231