PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G162700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 476aa    MW: 52279.6 Da    PI: 8.0989
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G162700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-056688123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y C+ C+k F r  nL+ H r H
  Sobic.004G162700.1.p 66 YICEVCHKGFQRDQNLQLHRRGH 88
                          89*******************88 PP
2zf-C2H2110.0014142164123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC  C+k +  +s+ k H + +
  Sobic.004G162700.1.p 142 WKCDRCSKKYAVQSDWKAHTKIC 164
                           58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-66588No hitNo description
Gene3DG3DSA:3.30.160.602.4E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7416688IPR007087Zinc finger, C2H2
SMARTSM003550.0386688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035541107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.07E-6137162No hitNo description
SMARTSM00355230142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSHTSEEESL NNFQQQAKLE ACPAGPTKAD TAMPVVKKRR GHPGILDADV EVVALSPKTL  60
LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST EAKKKVYVCP EVTCPHHDGS  120
RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK  180
DSFITHRAFC DALAEDNSKV NHSLATMVGN LHGHHHDIFS HGVPTFPTSP TDVMANLSNT  240
LITRNTTLFS NQMSPKDSGF PLDGSASSYP YMSMNSPYMS ATALLQKAAV IGAKTSQDPI  300
SPLLLKSFPS NVTTPSPRDH MDISSGSQGD SLGNSAANSI GIKAAEDEGS YMSGRGNILM  360
NTPWVNSYRP TTVPLIGLMN HPFGMRAEKE SSGLFSGSQT QHNRQENISG VGDVGLTQDF  420
LGLGGSGNLE MSSETYNADV TQLSYSDEQQ KSHEHMYSYH QSSLDSIALE KPIWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32138201366Zinc finger protein JACKDAW
5b3h_F2e-32138201366Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G162700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848810.0KF184881.1 Saccharum hybrid cultivar R570 clone BAC 172K24 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453919.20.0protein indeterminate-domain 12
TrEMBLA0A194YQ550.0A0A194YQ55_SORBI; Uncharacterized protein
STRINGSb04g021440.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-104indeterminate(ID)-domain 2