PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G159500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 277aa MW: 29897.2 Da PI: 5.084 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.9e-19 | 37 | 88 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a+++++g+ Sobic.004G159500.1.p 37 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAIAYDRAARNIRGA 88 5799******.**********843...4*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.29E-28 | 37 | 96 | No hit | No description |
Pfam | PF00847 | 4.2E-11 | 38 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-28 | 38 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-21 | 38 | 95 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-32 | 38 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.456 | 38 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 39 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MDFSYFFSSS SSSEKKSSTK RRQQQQQHQQ DNNGNETRYL GVRRRPWGRY AAEIRDPATK 60 ERHWLGTFDT AEEAAIAYDR AARNIRGANA RTNFAYPDLP PGSSVTPYLS PDLSADQLQH 120 YYYAAADPVA PAAAHQLATT PDCDHHQSAH GGGAGGNDPV YHQYHHVPVE TTMPSYGGAA 180 DASFMAYGGN AEMGMYCFEG ANNGAAGGGD DRAWCDASEL QFGGHNDDTA AAAAANASHG 240 MYFEEGYLHS PMFSPMPAAD EVVDGFQLGG SSSYYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 39 | 94 | 6 | 62 | ATERF1 |
3gcc_A | 2e-17 | 39 | 94 | 6 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00163 | DAP | Transfer from AT1G28160 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G159500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452175.2 | 0.0 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | A0A194YQ31 | 0.0 | A0A194YQ31_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G047999_P01 | 1e-122 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 8e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G159500.1.p |