PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G158901.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 293aa    MW: 31750 Da    PI: 11.5832
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G158901.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-19169218255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a++ a+++++g
  Sobic.004G158901.1.p 169 HYRGVRRRP-WGKWAAEIRDPA----KaARVWLGTFDTAEAAAAAYDDAALRFKG 218
                           7********.**********83....36************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-31168227IPR001471AP2/ERF domain
CDDcd000181.43E-16169227No hitNo description
PfamPF008471.5E-12169218IPR001471AP2/ERF domain
SMARTSM003809.0E-34169232IPR001471AP2/ERF domain
PROSITE profilePS5103225.132169226IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22169227IPR016177DNA-binding domain
PRINTSPR003672.3E-11170181IPR001471AP2/ERF domain
PRINTSPR003672.3E-11192208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVDHRRHGSK RPLPDQSDGG EEAAAHQSSA SQSLASSSSA PSSSQERHFQ RRQQQIDLGW  60
GGGGIGHHHR YLAQAAAPAP AWYHEQAEQQ GVYYSSSTMA YYDVGTRSSA SSSLQPGDMD  120
ATAVPPVATG GSPHHRVPLE AGAAAGGSSA AGQAAVEVEE GTSTTTMRHY RGVRRRPWGK  180
WAAEIRDPAK AARVWLGTFD TAEAAAAAYD DAALRFKGAK AKLNFPERVR GRTGQGAFLV  240
SPAATSWPAA PVISRRRRRR HRHRRRRCRF WTSRRGNSSG PHRLQRSADR RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-24168229466ATERF1
3gcc_A4e-24168229466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254261RRRRRRHR
2255265RRRRRHRHRRR
3259268RHRHRRRRCR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G158901.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057495e-91AP005749.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17.
GenBankAP0058425e-91AP005842.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22.
GenBankAP0149585e-91AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126105e-91CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8313305e-91CT831330.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647050.12e-83ethylene-responsive transcription factor ABI4 isoform X2
TrEMBLA0A1Z5RN700.0A0A1Z5RN70_SORBI; Uncharacterized protein
STRINGGRMZM2G016434_P017e-83(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-26related to AP2 6l