PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G153200.1.p
Common NameSb04g020490, SORBIDRAFT_04g020490
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 417aa    MW: 46861 Da    PI: 5.6702
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G153200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00044467223
                          EETTTTEEESSHHHHHHHHHH..T CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                          +C+dCgk+++++ +   H ++  H
  Sobic.004G153200.1.p 44 VCSDCGKPCRSQTEVDLHTKRtgH 67
                          8***************99998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.8.101.8E-1098159No hitNo description
SuperFamilySSF469346.06E-16103168IPR009060UBA-like
PROSITE profilePS5003011.101114155IPR015940Ubiquitin-associated domain
PfamPF006275.9E-6116152IPR015940Ubiquitin-associated domain
SMARTSM001656.0E-4116154IPR015940Ubiquitin-associated domain
SuperFamilySSF1435034.84E-28306412IPR018997PUB domain
CDDcd104611.09E-63310416No hitNo description
PfamPF094099.5E-24323394IPR018997PUB domain
SMARTSM005803.0E-25326389IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAGLSLRCGD CGAQLRSVEE AQAHAEATNH ANFVESTEAV LNLVCSDCGK PCRSQTEVDL  60
HTKRTGHTEF ADKTAEAAKP IDLEAPLKPA SEDAMDVDAS ASASAEPQEM VVPEVNKEML  120
TDLEGMGFST ARATRALHFS GNSTIEGAIN WLSEHQEDAD IDEMPLVPAN SKTEANKPSL  180
TPEEMKIKAQ ELRERARKKK EEEERRMERE REKERIRIGK ELLEAKRIEE QNERKRMIEL  240
RRLEKEEEKR AREKIRQKLE EDKAERRRKL GLPPEDPAAA KPSAPPPVEE KKSALPVRPA  300
TKAERMRDCL RNLKQQNKDD DAKVKRAFQT LLTYIGNVAK NPDEEKFRKI RLTNATFQER  360
VGNLHGGIEF LELCGFEKLE GNEFLFLARE KVDKAILNTA GAELNSAITN PFFGVL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.118780.0embryo| panicle| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G153200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550290.0BT055029.1 Zea mays full-length cDNA clone ZM_BFc0028E22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452138.10.0chromatin assembly factor 1 subunit A
TrEMBLC5XSJ70.0C5XSJ7_SORBI; Uncharacterized protein
STRINGSb04g020490.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84641517
Representative plantOGRP277333