PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G140000.1.p
Common NameSb04g017390, SORBIDRAFT_04g017390
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 283aa    MW: 30304.3 Da    PI: 6.4171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G140000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-1376119755
                           HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +ErrRR+r+N+++  Lr+++P+      +K++Ka+i + A+eY+ +Lq
  Sobic.004G140000.1.p  76 VMERRRRRRLNDRLYALRSVVPNI-----TKMDKASIIKDAIEYVLQLQ 119
                           69*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.69469118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1773134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-1675124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-1676133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-1176119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.70E-683115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDLTMGDSFA CFWDCLDDSE GMQSLYIGPD GDTAVSGGGV QLQVHDGYSS APDAAGSNFS  60
AGAEREGSRP CNMVTVMERR RRRRLNDRLY ALRSVVPNIT KMDKASIIKD AIEYVLQLQQ  120
LERQLLAEVA LLDTAANAHH LPAGCANTPS TEDGFAGHAA VSVSPTKKMK RNPSFSSHHS  180
RSSSPPVDAL EVRVSGAGDK VLVVSVACTH RRDAVAKVCR ALDGLRLRVI AANVTAASGT  240
VMHTALVQKE EMHQTEMKEM IETAISQLDD IVGSPLMSST SY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17784ERRRRRRL
27883RRRRRR
38188RRRLNDRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G140000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452037.10.0transcription factor bHLH35 isoform X1
TrEMBLC5Y1310.0C5Y131_SORBI; Uncharacterized protein
STRINGSb04g017390.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.19e-26bHLH family protein