PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G124300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CPP
Protein Properties Length: 544aa    MW: 59446.1 Da    PI: 7.3676
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G124300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR413.9e-1365102139
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                           k+kk+CnC++skClk+YCeCf++ ++C+  C+C++C N 
  Sobic.004G124300.1.p  65 KKKKHCNCRNSKCLKMYCECFQELQYCDG-CNCSNCGNI 102
                           589**************************.******996 PP
2TCR49.21.1e-15150190141
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                           k++kgC+Ckks ClkkYCeC++a+++Cs++C+C +CkN+e 
  Sobic.004G124300.1.p 150 KHHKGCHCKKSGCLKKYCECYQANVFCSKNCRCMHCKNSEG 190
                           589***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.2E-1165105IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.3666190IPR005172CRC domain
PfamPF036381.4E-967101IPR005172CRC domain
SMARTSM011143.8E-17150191IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.9E-12153188IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MEQGRNQQQL SSPPPVLAAA SETKAPAVSS QQPKPAAPVM PVPRQWPMAF NPLKPSTEVK  60
SVTPKKKKHC NCRNSKCLKM YCECFQELQY CDGCNCSNCG NIVGNENARN EAIEAIRQRN  120
PSAFQPKIEN GPNTLNVRKD NSGAVPVVAK HHKGCHCKKS GCLKKYCECY QANVFCSKNC  180
RCMHCKNSEG NEDTETSSQR DHASDRSHIQ QAANVAFNGT VGSSGYICSL SRKRSHEDAL  240
GVRIKSEGSM PETQTQYQQG NHADVSPLAP CSTGFDRHNA ANSKSNNPIY RSPLANTIHL  300
REVNDLVKHL VMVCRMAEAK IAEEKGFQSN NGLSNGNCKQ QDFKETSSID ILSKGCSHQP  360
NINEMGFHWS ETSNVSRPAS PTTQSLMCDE QNTTFGNEPA SPTTQALMCE EQNTTFGNEP  420
ASPTTQALMC EEQNTTFGND YKSSFPLVSR GQDISEINAV QENLVLTGLR QYLCTIIRRG  480
RTNEQNSSLE ATMELDAGQH HGAPPAFSAI ETEENFPSSS TIETPRTNQQ PTPNGGSKDS  540
IAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-226719611129Protein lin-54 homolog
5fd3_B1e-226719611129Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G124300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609020.0BT060902.1 Zea mays full-length cDNA clone ZM_BFb0068M03 mRNA, complete cds.
GenBankKJ7279980.0KJ727998.1 Zea mays clone pUT6120 CPP transcription factor (CPP9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453686.20.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A194YP990.0A0A194YP99_SORBI; Uncharacterized protein
STRINGSb04g010380.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-66Tesmin/TSO1-like CXC domain-containing protein