PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G117600.1.p
Common NameSb04g009800, SORBIDRAFT_04g009800
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 376aa    MW: 39579.2 Da    PI: 6.1097
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G117600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30170228259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp++++ tY+geHnh 
  Sobic.004G117600.1.p 170 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERSRADPNTFILTYTGEHNHA 228
                           79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-30159230IPR003657WRKY domain
PROSITE profilePS5081133.006164230IPR003657WRKY domain
SuperFamilySSF1182901.44E-25168230IPR003657WRKY domain
SMARTSM007741.5E-36169229IPR003657WRKY domain
PfamPF031062.0E-25171227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEEERCFNNW DLDAVVRLGC RRRLSPPGQP DPFASFLPPP PPSPPHKEKP VVPAPAAKEP  60
EPYAAWRFPD LGAAGGGQDG DELLRALLAA PPPPPPQPLP TPTPLPPPPP QQQRQPAVAA  120
VDVPLPQARP APARAQPSGR QVPGGVPRSK RRKNQVKKVV CHVPADGSSS DVWAWRKYGQ  180
KPIKGSPYPR GYYRCSSSKG CAARKQVERS RADPNTFILT YTGEHNHAAP THRNSLAGTT  240
RHKFPASATP QPPPPSVVVG GAGAGAGAAP GDAQHQHQQP SPSPTSTSTA GLSPTTPLRT  300
PSMEEDDEEE EDELLVEDME MAGEDELLFL NPDADAGAPM SSLFDVVDEP FLSSPWVTAT  360
SSAGEPATGA AGAGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-19153231280Disease resistance protein RRS1
5w3x_D1e-19153231280Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.45591e-31root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G117600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613700.0BT061370.1 Zea mays full-length cDNA clone ZM_BFb0140H07 mRNA, complete cds.
GenBankHQ8587190.0HQ858719.1 Zea mays clone UT1178 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451907.10.0probable WRKY transcription factor 27
TrEMBLC5XZJ00.0C5XZJ0_SORBI; Uncharacterized protein
STRINGSb04g009800.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-48WRKY family protein