PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G112200.1.p | ||||||||
Common Name | Sb04g009180, SORBIDRAFT_04g009180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 345aa MW: 38531.7 Da PI: 7.3532 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.4 | 1.2e-52 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+evd++k+ePwdL+ ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkat Sobic.004G112200.1.p 10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREVDLNKLEPWDLKDrcRIGTeSQDEWYFFSHKDKKYPTGTRTNRATTAGFWKAT 97 69****************************.9***************943444442445****************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk+++ g+ +gl+ktLvfy+grap+g+ktdW+mheyrl Sobic.004G112200.1.p 98 GRDKAIFLGnAGRRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 140 *******9767888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-59 | 7 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.351 | 10 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-27 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MHPSCSPLAV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREVDLNKL EPWDLKDRCR 60 IGTESQDEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNAGR RIGLRKTLVF 120 YTGRAPHGKK TDWIMHEYRL NDDSVEVPIT EDGWVVCRVF KKKSIQRGFD DHLGMAAAGD 180 DDELHSFHSP GGVMTPVDQK HGLHHLMHGG VPAFDPSMHL PHLTSAEAPL GAPAFTSGGT 240 SAVAMNLLDM GCSSHNMVMK MTTSCGSASD MPLNSGGERF GAAADWSILD KLLASHQNLD 300 QLFHCKFGGT TLAVPRHYQQ QQMQQQQQQL MEMSASSLHR LPLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-51 | 8 | 164 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-51 | 8 | 164 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-51 | 8 | 164 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-51 | 8 | 164 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-51 | 8 | 164 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-51 | 8 | 164 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.2812 | 0.0 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G112200.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953045 | 0.0 | EU953045.1 Zea mays clone 1377565 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451881.1 | 0.0 | NAC domain-containing protein 76 | ||||
Swissprot | Q5Z6B6 | 1e-104 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | C5XZ54 | 0.0 | C5XZ54_SORBI; Uncharacterized protein | ||||
STRING | Sb04g009180.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 3e-86 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G112200.1.p |
Entrez Gene | 8078339 |
Publications ? help Back to Top | |||
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