PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G106300.1.p
Common NameSb04g008670, SORBIDRAFT_04g008670
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 532aa    MW: 57851.8 Da    PI: 6.6871
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G106300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.8e-31121174255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  Sobic.004G106300.1.p 121 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 174
                           8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-29117175IPR009057Homeodomain-like
PROSITE profilePS5129412.601117177IPR017930Myb domain
SuperFamilySSF466895.2E-14120175IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-22121176IPR006447Myb domain, plants
PfamPF002499.3E-9122173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MVAREEQVVR EVKGKGVLVD ILEDDDEERS IDNNKLLDLN EGFDAESEEG EVGDDEEDEG  60
EEGDDGGSTT DVGGSGSSSN NSSTNNNSES KKADGKGGSK SEVSGEQRVP SVRQYNRSKL  120
PRLRWTPDLH MAFVHAVERL GGQERATPKL VLQMMNVRGL SIAHVKSHLQ MYRSKKLDQD  180
GRPRGAVSSV YSPMDFHFMR ADRRFHDLSF FQRAAALSSS RQLERGGFFA RNCSAPELSR  240
LYGLLHHRPA PTQTFDFRNS SFRKHEWASS NQQEAITMSR KHVTPPSTSP QTHPLASPVA  300
LRSDRRWWPF TDAGAAAAAA AAVAADEHRE ETGTNVKFDS CIGSSSRPLP LAMSPAAVSG  360
DHRLPFRWRH GGSGRDFVFG YPGSSSKITT RSSDPVVIDD GQPLEPQNSK HVVEPTRASA  420
APPDEASFIR RRPSPVEAQD ATPDLQLSLS PSSSVLASKK RKTISSSSMD TTTSCEFSIS  480
LSLSPPAAAV SMQQQQRQEK TRRSSDSSGG GGEGVLGQST LDLTMSIRAL E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-18122176357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-18122176357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-18122176357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-18122176357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G106300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5406076e-64JX540607.1 Paspalum vaginatum clone StvCtg_09077 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451851.10.0uncharacterized protein LOC8085581
TrEMBLC5XYZ40.0C5XYZ4_SORBI; Uncharacterized protein
STRINGSb04g008670.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-33G2-like family protein