PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G102700.1.p
Common NameSb04g008400, SORBIDRAFT_04g008400
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family BES1
Protein Properties Length: 376aa    MW: 38991.5 Da    PI: 10.546
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G102700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822144.78.1e-4533121285
                DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.....eeaeaagss 85 
                           ++ r+ +w+ErEnn+rRERrRR iaa+i++GLR++Gny+lp ++Dnn VlkALc+eAGw+ve+DGttyrkg kp+     + a+++gss
  Sobic.004G102700.1.p  33 AAVRELPWRERENNRRRERRRRLIAARIFTGLRKYGNYALPRKCDNNMVLKALCEEAGWTVEADGTTYRKGPKPPagddqHMADVVGSS 121
                           5678999*******************************************************************975442223333444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.5E-4336119IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MVMKGVGAGG SGGDGAWARA GDGNGKENGN GKAAVRELPW RERENNRRRE RRRRLIAARI  60
FTGLRKYGNY ALPRKCDNNM VLKALCEEAG WTVEADGTTY RKGPKPPAGD DQHMADVVGS  120
SAAVNPPGAG GASYSLNRAW SPSGGITLGG GGSGGAADPI PAWLKNLSKQ LGDNSYPNFF  180
ASSSNSKAPA MPQDGSRPSS PPRLHKKVRY YSSPPPATPP PSPARAPNNV LPPPWATGAG  240
ASRYSFQTST APLMSTVVGR PLGPDPPVTT LLAGFHLSTG AANKGPAYSS FVASGATSLG  300
ARSSASAWML PPLPGRSSSG ASAVVRGRGG KLLSPLGFSF HRSGGEEEVM NDKNTDEEEG  360
LELTLGNTET RKDRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A7e-1740110376446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B7e-1740110376446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C7e-1740110376446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D7e-1740110376446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G102700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453576.11e-132protein BZR1 homolog 4
TrEMBLA0A194YNS70.0A0A194YNS7_SORBI; Uncharacterized protein
STRINGSb04g008400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2780224
Representative plantOGRP1370724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.63e-22BES1 family protein