PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G100700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 264aa    MW: 27314.5 Da    PI: 4.9501
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G100700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-1853100152
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                           + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Sobic.004G100700.1.p  53 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 100
                           57*****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.50E-2053112No hitNo description
PfamPF008471.4E-1253100IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2154112IPR016177DNA-binding domain
PROSITE profilePS5103223.11754111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3154113IPR001471AP2/ERF domain
SMARTSM003803.5E-3554117IPR001471AP2/ERF domain
PRINTSPR003673.7E-105566IPR001471AP2/ERF domain
PRINTSPR003673.7E-107793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MPEGEVEVSS SPASSGATSS SPPPSPGARS RGAGAEKRAR ARDTDGIGSR SHPSYRGVRM  60
RAWGKWVSEI REPRKKSRIW LGTFPTPEMA ARAHDAAALV VKGPSAVLNF PDMAAALPRP  120
ASASPRDVQA AAARAAAMEP AALVLVPGAG GAPAEAAGAA LQLQPAAPPA AGHGQQQDEA  180
ELEAIVELPR LDEDYLMTTF GATTPCCLSS SFHDVATPWC DDTVWVDGDA GGYVAAQHDD  240
YLFGLLDGDH GWSQSVGALL WNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1746111772Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G100700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048571e-114AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06.
GenBankAP0149581e-114AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY2582811e-114AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314571.10.0ethylene-responsive transcription factor TINY
TrEMBLA0A194YNR10.0A0A194YNR1_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-27ERF family protein