PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G100500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 256aa    MW: 26942.2 Da    PI: 4.991
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G100500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-184794152
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                          + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Sobic.004G100500.1.p 47 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 94
                          57*****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-124794IPR001471AP2/ERF domain
CDDcd000185.02E-2047106No hitNo description
SuperFamilySSF541712.68E-2148106IPR016177DNA-binding domain
SMARTSM003803.0E-3448111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3148107IPR001471AP2/ERF domain
PROSITE profilePS5103223.03748105IPR001471AP2/ERF domain
PRINTSPR003673.6E-104960IPR001471AP2/ERF domain
PRINTSPR003673.6E-107187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MPDREESRSP ASSGASSSPP LSPAETAARR SSSSGCEKRA RDAGKHPSYR GVRMRAWGKW  60
VSEIREPRKK SRIWLGTFPT PEMAARAHDA AALVVKGPAA VLNFPDMAAA LPRPVSASPR  120
DVQAAAARAA AMEPSRMLCP SSAATTGGAA ALPLPTPALA SMEGQLHDDE LEAIVELPPL  180
DEDAAELLVP LGAASSFSFH DDATQASCWR DPEWIDHDVA AGYMAAAHDA DEMFGFAPDG  240
DHGWAQPVGT LLWNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-18451051172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G100500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269401e-107KJ726940.1 Zea mays clone pUT3486 AP2-EREBP transcription factor (EREB144) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453567.20.0ethylene-responsive transcription factor ERF039
TrEMBLA0A194YNT51e-180A0A194YNT5_SORBI; Uncharacterized protein
STRINGGRMZM2G047918_P011e-114(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-43ERF family protein