PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G094100.1.p
Common NameSb04g007750, SORBIDRAFT_04g007750
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 388aa    MW: 41662 Da    PI: 8.6765
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G094100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.6e-17200233134
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                           Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Sobic.004G094100.1.p 200 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 233
                           *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.8E-18194245IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-12195234No hitNo description
Gene3DG3DSA:3.30.50.102.6E-14198233IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.268198230IPR000679Zinc finger, GATA-type
CDDcd002021.31E-14199231No hitNo description
PfamPF003203.0E-15200233IPR000679Zinc finger, GATA-type
PROSITE patternPS003440200225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSTIYMSQLS TLPLMEMEGE QDQDQGLFRP APFHVAKDPP ILFPFMITNP VDQLQGQSSS  60
YGDQHLRQHV LSESTHQQFT DRMMMSGSEV FPTMPSPFRQ TIQSIDGDMI QRSAYDPYDT  120
ENNKHTEGLR SGGGGGGWTV SSSPPAKMKI MRRKATSEYP EGGGGGARKP RRRPQAHHQD  180
AESQLLQQQQ QAMGGVVRVC SDCNTTKTPL WRSGPCGPKS LCNACGIRQR KARRAMAAAA  240
AAAAASSNGG APQAATEQQP KPAKKEKRSD IVDRSSLPFK KRCKQTMVVV DHAAGVAATE  300
ATPPPPPPET AALTKDQADV DHVSSDKKQV NGHGATSLES SKIVATPPPQ AMSSFHAFPA  360
DEITDAAMLL MTLSCGHARL QLAMASS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.192320.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in leaves and stems, and, at low levels, in roots. {ECO:0000269|PubMed:23548780}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G094100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453545.20.0putative GATA transcription factor 22
SwissprotQ6YW486e-95CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A194YNP70.0A0A194YNP7_SORBI; Uncharacterized protein
STRINGSb04g007750.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-19GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]