PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G078100.1.p | ||||||||
Common Name | Sb04g006450, SORBIDRAFT_04g006450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C3H | ||||||||
Protein Properties | Length: 296aa MW: 30685.7 Da PI: 10.1191 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.1e-08 | 96 | 121 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ Sobic.004G078100.1.p 96 KTRLCNKYNTAEGCKWGDKCHFAHGE 121 8***********************96 PP | |||||||
2 | zf-CCCH | 34.6 | 3.1e-11 | 261 | 285 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C +fa+ G C++Gd+C+FaHg Sobic.004G078100.1.p 261 FKTKMCENFAK-GSCSFGDKCHFAHG 285 69*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.1 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.033 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 35 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-7 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-14 | 91 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-8 | 93 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.069 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.953 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-5 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.42E-13 | 157 | 235 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 4.1E-9 | 164 | 234 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.571 | 165 | 229 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 6.4E-14 | 165 | 233 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 9.51E-13 | 167 | 229 | No hit | No description |
Pfam | PF00013 | 3.1E-10 | 167 | 231 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-16 | 257 | 292 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-9 | 259 | 291 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-7 | 260 | 286 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.934 | 260 | 287 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-8 | 261 | 285 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDGGRKRGKA DGAKGASAGA KRSRESESFQ SGVGSKSKPC TNFFSTSGCP FGEGCHFLHY 60 FPGGYQAVSK MTNLGGTTIA SPGRMTMDGP PTPTVKTRLC NKYNTAEGCK WGDKCHFAHG 120 EKELGKPKLM GSYMPPPMGP RPTGHFAPPP MASPGLATPA SFGASATAKI SVDASLAGGI 180 IGRGGVNTKQ ISRVTGAKLA IRDHESDTSL KNIELEGTFD QIRNASAMVS ELIVSISGNA 240 PPQAKNPAGG THRGGRTGSN FKTKMCENFA KGSCSFGDKC HFAHGDNELR KPAAA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 9 | GRKRGKA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G078100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451712.1 | 0.0 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 1e-168 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | C5XXF8 | 0.0 | C5XXF8_SORBI; Uncharacterized protein | ||||
STRING | Sb04g006450.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 | Representative plant | OGRP1026 | 17 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-71 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G078100.1.p |
Entrez Gene | 8082890 |