PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G066700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 196aa    MW: 20134.8 Da    PI: 8.5192
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G066700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002285107123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C++C + F ++  L  H++ H
  Sobic.004G066700.1.p  85 FACHYCRRQFYSSQALGGHQNAH 107
                           78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.18E-683113No hitNo description
PROSITE profilePS5015711.13685112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEAEVDKQRV GFTGLNGGGN GHRGHHRAVS AAALVELNLL AGMVSTGCAR QNTAQPPPVV  60
VVLVPDVARS PAAVPAVESE PPQLFACHYC RRQFYSSQAL GGHQNAHKRE RTLARHRGDA  120
AAPLGLGHDH MYAARGGGGA PFAVAAPAPA LEWNNDAWSG QAAPAAVVAV GERLSTGPGV  180
GAAQELPKLD LTLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G066700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040871e-38AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09.
GenBankAP0149581e-38AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-38CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8354071e-38CT835407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122P15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316037.11e-105uncharacterized protein LOC110435049
TrEMBLA0A1Z5RLP21e-137A0A1Z5RLP2_SORBI; Uncharacterized protein
STRINGGRMZM2G417574_P012e-44(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-15C2H2 family protein