PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G066600.1.p | ||||||||
Common Name | Sb04g005580, SORBIDRAFT_04g005580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ARR-B | ||||||||
Protein Properties | Length: 632aa MW: 68631.8 Da PI: 6.5687 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.5 | 6.1e-28 | 213 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl Sobic.004G066600.1.p 213 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 266 79*******************.********************************8 PP | |||||||
2 | Response_reg | 82.2 | 1.7e-27 | 30 | 138 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 vl vdD+p+ ++ll+++l++ +y +v+++ ++ al+ll+ek+ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+ge +++ Sobic.004G066600.1.p 30 VLAVDDDPTCLKLLEKLLQHCQY-HVTTTGQAATALKLLREKKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVM 116 799********************.***************888888*******************87754.558**************** PP HHHHTTESEEEESS--HHHHHH CS Response_reg 88 ealkaGakdflsKpfdpeelvk 109 + + Ga d+l Kp+ +e+l++ Sobic.004G066600.1.p 117 KGITHGACDYLLKPVRIEQLRT 138 ********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.7E-197 | 4 | 631 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 2.56E-35 | 27 | 148 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.7E-42 | 27 | 165 | No hit | No description |
SMART | SM00448 | 7.8E-33 | 28 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.815 | 29 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.0E-24 | 30 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.86E-27 | 31 | 143 | No hit | No description |
PROSITE profile | PS51294 | 11.34 | 210 | 269 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.91E-20 | 210 | 270 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 211 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-24 | 213 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-6 | 215 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MTVEDVKLQA AKANGGGHGA KDQFPVGMRV LAVDDDPTCL KLLEKLLQHC QYHVTTTGQA 60 ATALKLLREK KDQFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG ETQTVMKGIT 120 HGACDYLLKP VRIEQLRTIW QHVVRRRSCD AKNNGNDNDD SGKKLQVVSA EGDNGGGNRN 180 KRTSRRGRDD NGDDGDDSDE NSNENGDSST QKKPRVVWSV ELHRKFVAAV NQLGIDKAVP 240 KKILDLMNVE NITRENVASH LQKYRLYLKR LSADASRQAN LTAAFGGRNP AYVNMGLDAF 300 RQYNAYGRYR PVPTTNHSQP NNLLARMNSP AFGMHGLLPS QPLQIGHTQN NMSTSVGNVG 360 GMNNGNLIRG AHMPLQDTSK CFPTGPSGNS FANISNSIQL VTTNNLPLQS LEPSNQQHLG 420 RLQSSADPFN SFVGESPQFP DLGRCNTTWP TAVSSSNVQE LGQKDRIVNG PKLEPLSSFT 480 EASSQIPLLG NEMQSQVASL ASNGLPMPFT QEAAPFAYGS STNSREMLNN NLALSNSGIN 540 SSLPNLRIDG SVVPRQTLDG GNSGGVPPLQ DGRIDHQAVS SHLSYNNELM MGTSRLQRGL 600 SGGLDDIVVD MFRPDRADDG VPFIDGDWEL V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-25 | 209 | 272 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.20206 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G066600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB062095 | 0.0 | AB062095.1 Zea mays ZmRR9 mRNA for response regulator 9, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002453411.1 | 0.0 | two-component response regulator ORR24 | ||||
Swissprot | Q6H805 | 0.0 | ORR24_ORYSJ; Two-component response regulator ORR24 | ||||
TrEMBL | C5XWW5 | 0.0 | C5XWW5_SORBI; Two-component response regulator | ||||
STRING | Sb04g005580.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8147 | 34 | 47 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-105 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G066600.1.p |
Entrez Gene | 8079408 |
Publications ? help Back to Top | |||
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