PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G062100.1.p | ||||||||
Common Name | Sb04g005180, SORBIDRAFT_04g005180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | SBP | ||||||||
Protein Properties | Length: 446aa MW: 46454.3 Da PI: 7.9414 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.1 | 6.9e-40 | 205 | 279 | 2 | 76 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cq+egC+adls ak+yhrrhkvCe h+ka +v+++g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk+ Sobic.004G062100.1.p 205 CQAEGCKADLSAAKHYHRRHKVCEYHAKAGSVAAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKP 279 *************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-33 | 197 | 266 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.906 | 202 | 279 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.41E-37 | 203 | 280 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.3E-30 | 205 | 278 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MSPTSTTDVD FSFGPMQSYV GFDAGGMAMP GVIERPLLQN HHHNNNHNLG VYDSFDFAAA 60 AGLPFQESGL LPPTSSMPLM APPTTSMAAM AAMPPSLLLT LPGVPTAADV VYPFGGGGAG 120 GGFLKREDGC GGGPLVDAGG SGGRIGLNLG RRTYFSPADV LAVDRLLTRS RLGGGVGVGM 180 GMGLGMGVLG LGLGAAHHHH QPPKCQAEGC KADLSAAKHY HRRHKVCEYH AKAGSVAAAG 240 KQQRFCQQCS RFHVLAEFDE AKRSCRKRLT EHNRRRRKPI SAQGKDSSPP PPPPKKADTC 300 ITTSYSNDLK TGASNTAAAK STAISPNGSG VSCLDVMDNG QTSSAAAAVV APTALSLAAT 360 PPPLHEKDGS LDSMLLMQRL QGRRDNDDDE EHRHFITSLV MQTQQQQQQH SGGGAGAGNI 420 LSCSSVSDQQ QNGGGCNGFF EVDFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-29 | 205 | 278 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 261 | 278 | KRSCRKRLTEHNRRRRKP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G062100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451645.2 | 0.0 | squamosa promoter-binding-like protein 5 | ||||
Swissprot | Q0E3F8 | 4e-73 | SPL5_ORYSJ; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | A0A1Z5RL61 | 0.0 | A0A1Z5RL61_SORBI; Uncharacterized protein | ||||
STRING | Sb04g005180.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2375 | 35 | 93 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 1e-39 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G062100.1.p |
Entrez Gene | 8076140 |