PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G058900.1.p | ||||||||
Common Name | Sb04g004940, SORBIDRAFT_04g004940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | SBP | ||||||||
Protein Properties | Length: 338aa MW: 36775 Da PI: 9.0139 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.3 | 6.9e-41 | 63 | 140 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC dl+++k+yhr+h+vCe+h+k+p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+ Sobic.004G058900.1.p 63 RCQVEGCGLDLTRVKDYHRKHRVCEAHTKSPRVIVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQP 140 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.9E-34 | 57 | 125 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.419 | 61 | 138 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.66E-39 | 62 | 143 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.9E-31 | 64 | 137 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MEWTAPKPAS SPSSPPLLWD WGDHAATGSG SSSGDAPARR GAGKEREAKR ARGEDGGGGA 60 EVRCQVEGCG LDLTRVKDYH RKHRVCEAHT KSPRVIVAGQ ERRFCQQCSR FHALSEFDQK 120 KRSCRRRLSD HNARRRKPQP DAFTFASARL PSSLFDDRRQ ISFVWNKAPV SHVRPFTSPW 180 DSSSDLKLPH AKETREVSTK VGTITGQVHL DKSHMSNAIP TLSHGKDEPW PMKGPDMSIT 240 ASKFDGAPDL QRALSLLSVG ACGLPDPVHQ TSCVIQFTGA SENSGDLHLS HGGNSGPASC 300 ADGQHIAAQS QSQLVRFTMD TSNNVYEPSF FGVNQIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-26 | 53 | 137 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 136 | KKRSCRRRLSDHNARRRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G058900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033415 | 0.0 | BT033415.1 Zea mays full-length cDNA clone ZM_BFb0223G18 mRNA, complete cds. | |||
GenBank | BT087508 | 0.0 | BT087508.1 Zea mays full-length cDNA clone ZM_BFb0098L17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451633.1 | 0.0 | squamosa promoter-binding-like protein 4 | ||||
Swissprot | Q653Z5 | 4e-97 | SPL11_ORYSJ; Squamosa promoter-binding-like protein 11 | ||||
TrEMBL | C5XW64 | 0.0 | C5XW64_SORBI; Uncharacterized protein | ||||
STRING | Sb04g004940.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6271 | 29 | 52 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 3e-44 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G058900.1.p |
Entrez Gene | 8076126 |