PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G051500.1.p
Common NameSb04g004410, SORBIDRAFT_04g004410
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 313aa    MW: 32958 Da    PI: 5.9468
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G051500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF565.1e-182976249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +i+    r+v fskRr g+ KKA+EL+ L++a+va+i+fs+ gk y +
  Sobic.004G051500.1.p 29 PIKCMEARHVCFSKRRDGLYKKASELCALTGAKVALIVFSPAGKPYSF 76
                          5666778************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.0E-252079IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.7082080IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-252191IPR002100Transcription factor, MADS-box
CDDcd002658.56E-312191No hitNo description
PRINTSPR004041.8E-142242IPR002100Transcription factor, MADS-box
PfamPF003199.8E-223076IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-144257IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-145778IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVLGEAGGGG GGERKRKKTL GRRKIEIKPI KCMEARHVCF SKRRDGLYKK ASELCALTGA  60
KVALIVFSPA GKPYSFGHPS VSAVVDRYLD PDLPGSAAND VSEAPTTTMY EFDGQRDRLC  120
EAIAAEARRK DALDAAARAA GVWTDDVVRQ AEMPELVAML AALERVKDDA DHAMRQHQCA  180
AAAAGACDVC YYDLGSDGTF TADEYGGASS GSHHHQQAAM DAQTMALLMG GNVVTHAAAH  240
APTMMMLPPP DLQPPAAAAR VPLSFNYGTD HNHVTGYEGY AYDLGDGGGQ GGAAYETEGC  300
YFGPTATCNF FG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11317RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G051500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650618.11e-113agamous-like MADS-box protein AGL61
TrEMBLA0A194YMV90.0A0A194YMV9_SORBI; Uncharacterized protein
STRINGSb04g004410.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Representative plantOGRP1690233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-22M-type_MADS family protein