PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G047500.1.p | ||||||||
Common Name | Sb04g004060, SORBIDRAFT_04g004060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | Whirly | ||||||||
Protein Properties | Length: 231aa MW: 25216.8 Da PI: 10.1678 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 187.5 | 2.3e-58 | 54 | 190 | 2 | 138 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkv 90 v+k+kaal++++++p+f++l+sg +++r+G+++l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+sneG v Sobic.004G047500.1.p 54 VFKGKAALSIQPILPSFSKLESGGSRVSRNGSIMLTFFPAVGPRKYDFTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSNEGMV 142 9**************************************************************************************** PP Whirly 91 rkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 +k+l++ Pl sG+fvn++v ns+ k+n+++svP++kaefav+r+ l Sobic.004G047500.1.p 143 KKSLSITPLGSDSGYFVNITVVNSVEKTNDRLSVPITKAEFAVMRTTL 190 *********************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.6E-73 | 41 | 209 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 4.55E-70 | 46 | 230 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.5E-57 | 54 | 188 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MLRLSRFLPS ASRRGFDLKE SLLSGSLTFQ QAVSTSAANI DDNLSSKKYA SYTVFKGKAA 60 LSIQPILPSF SKLESGGSRV SRNGSIMLTF FPAVGPRKYD FTKKQLFALS PTEVGSLISL 120 GPAESCEFFH DPSMKSSNEG MVKKSLSITP LGSDSGYFVN ITVVNSVEKT NDRLSVPITK 180 AEFAVMRTTL SFALPHIMGW DQALTNHHPS PPAISKPRVE RPHPDSEWER * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 8e-74 | 45 | 207 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 8e-74 | 45 | 207 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 8e-74 | 45 | 207 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 8e-74 | 45 | 207 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.12208 | 0.0 | ovary |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G047500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963457 | 0.0 | EU963457.1 Zea mays clone 262942 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002453336.1 | 1e-168 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 2e-73 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | C5XVD2 | 1e-167 | C5XVD2_SORBI; Uncharacterized protein | ||||
STRING | Sb04g004060.1 | 1e-168 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 | Representative plant | OGRP2316 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 2e-75 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G047500.1.p |
Entrez Gene | 8074659 |