PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G040700.2.p | ||||||||
Common Name | Sb04g003530, SORBIDRAFT_04g003530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 223aa MW: 26113.5 Da PI: 8.4955 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00091 | 9 | 24 | 5 | 20 |
TTTEEESSHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHi 20 +C++ F+r++ L++Hi Sobic.004G040700.2.p 9 NCNTEFKRREALESHI 24 6**************8 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010496 | Biological Process | intercellular transport | ||||
GO:0046907 | Biological Process | intracellular transport | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEVQALRVNC NTEFKRREAL ESHITDLKKD NERLRRLYTE TLFKFTNQVK FHAEAQSLKE 60 ELEKANSRLI SMEEEHKREA EQLKHSSEMN SNDLENKLSH ALVQQARDEA AMKQLKSELS 120 AHKAHIDMLG SRLEQVTADV HSQYKNEIQD LRDVISVEQE EKKDMHRKLQ NAENELRITR 180 MKQAEQQRDS VSVQHVETLK QKVMKLRKEN ESLKRRLASS VA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G040700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033701 | 0.0 | BT033701.1 Zea mays full-length cDNA clone ZM_BFc0115E12 mRNA, complete cds. | |||
GenBank | EU962609 | 0.0 | EU962609.1 Zea mays clone 244191 4/1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451544.1 | 1e-156 | protein At-4/1 | ||||
TrEMBL | A0A1Z5RKT9 | 1e-155 | A0A1Z5RKT9_SORBI; Uncharacterized protein | ||||
STRING | Sb04g003530.1 | 1e-156 | (Sorghum bicolor) |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G040700.2.p |
Entrez Gene | 8069969 |