PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G040700.1.p
Common NameSb04g003530, SORBIDRAFT_04g003530
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 251aa    MW: 29261 Da    PI: 7.4359
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G040700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00113752520
                          TTTEEESSHHHHHHHH CS
               zf-C2H2  5 dCgksFsrksnLkrHi 20
                          +C++ F+r++ L++Hi
  Sobic.004G040700.1.p 37 NCNTEFKRREALESHI 52
                          6**************8 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010496Biological Processintercellular transport
GO:0046907Biological Processintracellular transport
GO:0005783Cellular Componentendoplasmic reticulum
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MELASGDDEL KSLLQNFHRV SQGYKDALME VQALRVNCNT EFKRREALES HITDLKKDNE  60
RLRRLYTETL FKFTNQVKFH AEAQSLKEEL EKANSRLISM EEEHKREAEQ LKHSSEMNSN  120
DLENKLSHAL VQQARDEAAM KQLKSELSAH KAHIDMLGSR LEQVTADVHS QYKNEIQDLR  180
DVISVEQEEK KDMHRKLQNA ENELRITRMK QAEQQRDSVS VQHVETLKQK VMKLRKENES  240
LKRRLASSVA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G040700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9626090.0EU962609.1 Zea mays clone 244191 4/1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451544.11e-179protein At-4/1
TrEMBLC5XUN61e-177C5XUN6_SORBI; Uncharacterized protein
STRINGSb04g003530.11e-178(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1225322