PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G036900.6.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family SBP
Protein Properties Length: 325aa    MW: 35331.1 Da    PI: 10.1252
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G036900.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.21.8e-41180256278
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           CqvegC++dls+akeyhr+hkvCe hska++v+v+gle+rfCqqCsrfh lsefD++k+sCrrrL++hn+rrrk+q+
  Sobic.004G036900.6.p 180 CQVEGCKVDLSSAKEYHRKHKVCEPHSKASKVVVAGLERRFCQQCSRFHGLSEFDQKKKSCRRRLNDHNARRRKPQP 256
                           **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.5E-33173241IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.009177254IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.71E-39179259IPR004333Transcription factor, SBP-box
PfamPF031101.3E-31180253IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGSFGMDWNQ KASVLWDWEN LPPIGANMSD NPRMTAAPQG EAKFAGLEAT RHESVHSSCG  60
TFSSSSEMGY GSSKSSVSAS TDSSPKAKGN SMELNFAPAK APDKNTDSGK VDDARTSPSS  120
VIAISSGEPV LSLKLGKRTY FEDVCGGQSV KSLPSDTSAV TPLASAKKAK SAPNTQKSYC  180
QVEGCKVDLS SAKEYHRKHK VCEPHSKASK VVVAGLERRF CQQCSRFHGL SEFDQKKKSC  240
RRRLNDHNAR RRKPQPEAFS FGSSRLSTMF YGSSKPLVAL SFSEANTLFI FLLLATIMFK  300
NLRNAKLHIL SVKLIFLFIY NSVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-291802531184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235252KKKSCRRRLNDHNARRRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G036900.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0395210.0BT039521.1 Zea mays full-length cDNA clone ZM_BFc0017D10 mRNA, complete cds.
GenBankBT0399450.0BT039945.1 Zea mays full-length cDNA clone ZM_BFc0054D09 mRNA, complete cds.
GenBankBT0538640.0BT053864.1 Zea mays full-length cDNA clone ZM_BFb0339F10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315534.10.0squamosa promoter-binding-like protein 3 isoform X1
RefseqXP_021315535.10.0squamosa promoter-binding-like protein 3 isoform X1
RefseqXP_021315536.10.0squamosa promoter-binding-like protein 3 isoform X1
SwissprotA2X0Q61e-107SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z81e-107SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A1Z5RKS60.0A0A1Z5RKS6_SORBI; Uncharacterized protein
STRINGSb04g003175.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-42squamosa promoter binding protein-like 2