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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.004G036500.1.p |
| Common Name | Sb04g003140, SORBIDRAFT_04g003140 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
G2-like |
| Protein Properties |
Length: 431aa MW: 47100.9 Da PI: 8.0884 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.004G036500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 97.3 | 1.1e-30 | 258 | 312 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprlrWt eLHe Fv+ v++LGG+ekAtPk +l+l+kv+gLt++hvkSHLQkYR
Sobic.004G036500.1.p 258 KPRLRWTLELHELFVKSVNKLGGPEKATPKGVLKLVKVEGLTIYHVKSHLQKYRF 312
79****************************************************6 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 431 aa
Download sequence Send
to blast |
MTKETNSLNL KAVKQFTSPG RMAHTRTAPQ PSAHQLLSAP HDLLPSSSCA ASQSSKILPF 60
DLQKCSPDST NGTPVSRVSQ AGLLSKDLVS PSSSSTFCTS MYSSSSTNSK SCRQADALPF 120
LPHPPKSEHQ QTSGGQSSSS SSLLFGTDLN NGGQSEAEPA ADLKDFLNLS GDASGGSFHG 180
ESNGMAFREQ MEFQFLSEQL GIAITDNEES PRLDDIYDRP PQTSSCPVLS CSDQDDLQRT 240
GSPVKVQLSS SRAASCNKPR LRWTLELHEL FVKSVNKLGG PEKATPKGVL KLVKVEGLTI 300
YHVKSHLQKY RFAKHLPETK EDMKFSSEDK ISKSEIPGNN AGRKKSLQLA EALRMQMEVQ 360
KQLHEQLEVQ RQLQVRIEEH AKYLQKILEQ QKASNSLPAM TSSIERELSE SKEEKKPKTQ 420
ADTFSAPLPN *
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4k_A | 8e-24 | 258 | 315 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 8e-24 | 258 | 315 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 8e-24 | 258 | 315 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 8e-24 | 258 | 315 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 8e-24 | 258 | 315 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 8e-24 | 258 | 315 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 8e-24 | 258 | 315 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 8e-24 | 258 | 315 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed throughout all stages of plant growth. Increased expression in leaves before the booting stage. {ECO:0000269|PubMed:26082401}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the root cap and in the exodermis of the root, in the root tip of lateral roots, in the mesophyll cells of the leaf, in pollen, vascular cylinder of the anther and the veins of the lemma, palea and pistils, and in the xylem and phloem regions of large vascular bundles, small vascular bundles and diffuse vascular bundles in node I (PubMed:26082401). {ECO:0000269|PubMed:26082401}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT038317 | 0.0 | BT038317.1 Zea mays full-length cDNA clone ZM_BFb0227D23 mRNA, complete cds. |
| GenBank | EU954590 | 0.0 | EU954590.1 Zea mays clone 1472551 hypothetical protein mRNA, complete cds. |
| GenBank | JX469978 | 0.0 | JX469978.1 Zea mays subsp. mays clone UT3338 G2-like transcription factor mRNA, partial cds. |
