PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G034100.1.p
Common NameSb04g002940, SORBIDRAFT_04g002940
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Nin-like
Protein Properties Length: 748aa    MW: 79284.7 Da    PI: 5.9857
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G034100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK863.2e-27516565251
                RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                           ek++sle+l++yFs+++kdAAk+Lgvc+T++KriCR++GI+RWP+Rk+++
  Sobic.004G034100.1.p 516 EKTVSLEELQRYFSGSLKDAAKSLGVCPTTMKRICRKHGISRWPFRKLAK 565
                           799********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.450.407.6E-4128206IPR029016GAF domain-like
PROSITE profilePS5151917.95501586IPR003035RWP-RK domain
PfamPF020427.2E-25518565IPR003035RWP-RK domain
SuperFamilySSF542771.41E-18641709No hitNo description
SMARTSM006665.0E-18642735IPR000270PB1 domain
PROSITE profilePS5174519.116642735IPR000270PB1 domain
PfamPF005643.3E-13643712IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2407.6E-23643709No hitNo description
CDDcd064076.15E-31643734No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MAMEMETDMD GVLQRFDVDL LLDGHGSSDS PCGSASGGGG TQPQDNKEVV GGGAVKERIA  60
RALRIYKDAA AGHDGGGGAL VQVWAPARDG DRRVLATRGQ PFVLPPPRCH RLFQYRTVSL  120
THAFPIGGGA VPGERGLPGR VFDAGEPEWT PNVQYYGTGE YARISYALIY DIQAALALPI  180
LDPATGSCLA VLELVTTSPR LHFAAEVDRL SKALQAVALR GSEICRHPAP EVCNDDEAAA  240
QVAMSEVAEI LSKVGEAHKL PLAQVWGRCR RCSTGTEHAS LSLTAAGTPF YLTDTNPTLL  300
GFHEACVEHH LRSGRGGLVD EAAAARRPRF CADVTKYSMD AYPLAHHARF CGLAGCLAVC  360
AQLRRGGDAS MDMNGGGDGG WDECVLEFFL PPDCRDGAAQ KAAADAVAAT IMERFGNGDL  420
KAVVISGLQD LAFDIVADGE CVLRPDTVTM ADAPELELNY HGGDERDSDE EGLCLAAAMG  480
TTAEIEALKM HHDEHHGGED PRSQVGKKTT TKRKGEKTVS LEELQRYFSG SLKDAAKSLG  540
VCPTTMKRIC RKHGISRWPF RKLAKANRSL DKIKCVFESV QGSSQAMVSP APAVAAARRA  600
PALPCLSSAL RVASSQGSCQ APPPPQKEAT WRKPLHGGDA GVVTVKANYR GDIIRFRVPS  660
SAGVATVKGE VAKRLGLEAG EFDVKYLDDD NEWVLLSCDA DFQECLDVVP ALSGASTSSG  720
SGMAQPVVRL MVQEVAEIHG SSCGSSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G034100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0687980.0BT068798.1 Zea mays full-length cDNA clone ZM_BFc0004I06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453272.10.0protein NLP3
TrEMBLC5XTY50.0C5XTY5_SORBI; Uncharacterized protein
STRINGSb04g002940.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Representative plantOGRP2991697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.11e-108Nin-like family protein