PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G027800.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family BES1
Protein Properties Length: 717aa    MW: 80537.1 Da    PI: 7.933
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G027800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221586.7e-491062464134
                DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl...eeaeaagssasas 89 
                           g++++++E+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +pl     ++  g ++ as
  Sobic.004G027800.2.p 106 GEREREREKERTKLRERHRRAITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQPDGTTFRSSNQPLlppPPPQLHGVFQVAS 194
                           67899******************************************************************99988899********** PP

                DUF822  90 pesslq.sslkssalaspvesysaspksssfpspssldsislasa......a 134
                           +e++   ++l+s+ + +p++s+++ +++++++spsslds+ +  +       
  Sobic.004G027800.2.p 195 VETPALiNTLSSYVIGTPLDSQASALQTDDSLSPSSLDSVVADRSiktenyG 246
                           ****9999*******************************9876555544443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.5E-46106256IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.802.4E-171276710IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514451.16E-167277712IPR017853Glycoside hydrolase superfamily
PfamPF013738.1E-83299671IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.6E-53314328IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.6E-53335353IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.6E-53357378IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.6E-53450472IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.6E-53523542IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.6E-53557573IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.6E-53574585IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.6E-53592615IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.6E-53630652IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MRVAPFDLLL TAVIERPRGK MDPLRSRSNC SWKEPTPRRS AAACGCGHAV ARRSRPQIGA  60
GAGGWKRPRA MKHPPQRDGE PSPSPPPQRR PRGFASTAGG SPRRRGERER EREKERTKLR  120
ERHRRAITSR MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVQPDGTT FRSSNQPLLP  180
PPPPQLHGVF QVASVETPAL INTLSSYVIG TPLDSQASAL QTDDSLSPSS LDSVVADRSI  240
KTENYGNSSS VSSLNCMDND QQLMRSAVLF PGDYTKTPYI PVYASLPMGI INSHCQLVDP  300
ESVRAELRHL KSLNVDGVVV DCWWGIVEAW TPRKYEWSGY RDLFGIIKEF KLKVQVVLSF  360
HGSGEIGSGD VLISLPKWIM EIAKENQDIF FTDREGRRNT ECLSWGIDKE RVLRGRTGIE  420
VYFDFMRSFH MEFRNLSEEG LVSSIEIGLG ASGELRYPSC PDTMGWKYPG IGEFQCYDRY  480
MQKHLRQSAL SRGHLFWARG PDNAGYYNSR PHETGFFCDG GDYDSYYGRF FLNWYSGVLM  540
DHVDHVLSLA SLAFDGAEIV VKVPSIYWWY RTASHAAELT AGFYNPTNRD GYSPVFRMLK  600
KHSVILKLVC YGPEFTIQEN DEAFADPEGL TWQVMNAAWD HGLSLCVESA LPCHNGEMYS  660
QILDTAKPRN DPDRHHAAFF AYRQQPPFLL QREVCFSELC TFVKCMHGEA PHNGEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12127970911444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G027800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315563.10.0beta-amylase 8 isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1Z5RKL30.0A0A1Z5RKL3_SORBI; Beta-amylase
STRINGGRMZM2G069486_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Representative plantOGRP97651112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]