PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G023500.1.p
Common NameSb04g002090, SORBIDRAFT_04g002090
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 290aa    MW: 30656.7 Da    PI: 7.0827
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G023500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.5e-19199232134
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                           Cs+C +t+Tp+WR gpdg+ tLCnaCGl+y +++
  Sobic.004G023500.1.p 199 CSHCDSTETPQWRAGPDGPGTLCNACGLRYTLNK 232
                           ******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.888193231IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-15193233IPR013088Zinc finger, NHR/GATA-type
SMARTSM004013.9E-17193247IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-15195256No hitNo description
CDDcd002028.53E-16198254No hitNo description
PROSITE patternPS003440199224IPR000679Zinc finger, GATA-type
PfamPF003201.8E-16199233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MLQLSCLSSL GFLDAGVADC DGSCGLDGGG GPCLLHSGLC CPADSLDDTV VIEFINNEEF  60
LEDLAIAASL PPGTELLLPT AERGCQGVSS ADGAPRLPVR SPLSSSDNSS WMTSSLAAEH  120
PPPPLSPAVV SRLVVPKRKR DRSSVMRGRR PWSLDMPNIP TPHAANPSSS GGGGGSEVVL  180
QQCLVPRPPA NRRRVQRACS HCDSTETPQW RAGPDGPGTL CNACGLRYTL NKLLPEYRPS  240
TSPSFQSDKH SNRHRKVVKL RERNAKDTVV ISMPPAPPPG DGGEFMDHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G023500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453234.10.0GATA transcription factor 5
TrEMBLA0A194YND30.0A0A194YND3_SORBI; Uncharacterized protein
STRINGSb04g002090.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-27GATA transcription factor 4