PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G012100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 25270.7 Da PI: 6.2944 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.8 | 2.9e-11 | 65 | 112 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRd++N++f eL +++ + ++ Kl+Ka iL A + + +L Sobic.004G012100.1.p 65 SKACREKMRRDKLNDRFLELSSVMNPG---KQAKLDKANILSDAARMVAQL 112 6789**********************9...9**************999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-13 | 54 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.322 | 61 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.61E-8 | 64 | 117 | No hit | No description |
Pfam | PF00010 | 1.0E-8 | 65 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-13 | 66 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-8 | 67 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MDCAVGGDPV EDFLLGGAGD DGDLAIFCDG GRLGIEGVNG DACGFDQSNL GKRGRDEPSS 60 SGPKSKACRE KMRRDKLNDR FLELSSVMNP GKQAKLDKAN ILSDAARMVA QLRGEAEKLK 120 ESNEKLRENI KDLKEEKNEL REEKVRLKVE KDRLEQQVKA MSVAPTGYVP HLPHPASYHP 180 AAFTPFVPPQ QAPANKSAPI PAAFPGMAMW QWLPPTIVDT TQDPKLWPPN A* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.4978 | 0.0 | callus| embryo| leaf| pollen| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G012100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728006 | 0.0 | KJ728006.1 Zea mays clone pUT6139 bHLH transcription factor (bHLH128) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021314882.1 | 1e-170 | transcription factor ILR3-like isoform X1 | ||||
Swissprot | Q9FH37 | 8e-58 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A194YM80 | 1e-169 | A0A194YM80_SORBI; Uncharacterized protein | ||||
STRING | Sb04g001200.1 | 1e-169 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8173 | 36 | 46 | Representative plant | OGRP755 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G012100.1.p |