PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G003401.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 477aa MW: 52794.9 Da PI: 6.8533 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.8 | 2.9e-28 | 40 | 89 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+++ rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+ly ++s Sobic.004G003401.1.p 40 RIEDSTSRQVTFSKRRSGLLKKAYELSVLCDAEVALIVFSPRGRLYQFAS 89 8***********************************************86 PP | |||||||
2 | K-box | 73.9 | 4.4e-25 | 113 | 202 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e+ e+++ e++ L k+i+ +++ +R+llGe+L+s+s++eL++Le qLeksl+ iR++K++ l++qi el++ke++l en +Lr + Sobic.004G003401.1.p 113 VETGIEKWKYEATTLGKKIDAIETYKRKLLGENLGSCSVQELKELEAQLEKSLSIIRQRKERKLMDQILELREKEQKLLMENAMLRDQC 201 567789********************************************************************************987 PP K-box 99 e 99 + Sobic.004G003401.1.p 202 K 202 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-36 | 31 | 90 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.969 | 31 | 91 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-29 | 33 | 115 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 33 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-28 | 33 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-26 | 40 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.44E-34 | 41 | 108 | No hit | No description |
PRINTS | PR00404 | 3.0E-28 | 53 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-28 | 68 | 89 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.553 | 117 | 207 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.2E-25 | 118 | 201 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MVMATAAAAM DVDAPAPAPV PDGNAAANKQ GRRGRREMRR IEDSTSRQVT FSKRRSGLLK 60 KAYELSVLCD AEVALIVFSP RGRLYQFASA ADLQNTIDRY LKHTEGTLAN GKVETGIEKW 120 KYEATTLGKK IDAIETYKRK LLGENLGSCS VQELKELEAQ LEKSLSIIRQ RKERKLMDQI 180 LELREKEQKL LMENAMLRDQ CKALPLLELN DNKEHDHHMD GAGDGGEDDE AAAAKEDVET 240 ELAIGTVVMD KAIMSNNQAG KVLKKGKKKQ AKDELDRQKQ AEKKRRRLEK ALANSAAIIS 300 ELEKKKQKKK EEQQRLDEEG AAIAEAVALH VLIGEDSDEP CHLMLNKHIR CNHWDASAAF 360 EFTVDAQSTD IYPSDDGLIC ASHAYAPRPK GRWADWGIGQ PLPSWGEVSD LQGPYYQGTF 420 HQSVTCPGFI AAQAVSSLQI REESSEITSP SQGAAAATVV NRMLGGTNRL NLYREI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n6j_A | 1e-16 | 33 | 143 | 2 | 93 | Myocyte-specific enhancer factor 2B |
1n6j_B | 1e-16 | 33 | 143 | 2 | 93 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 266 | 286 | KKKQAKDELDRQKQAEKKRRR |
2 | 283 | 287 | KRRRL |
3 | 284 | 307 | RRRLEKALANSAAIISELEKKKQK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.19800 | 1e-148 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G003401.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067854 | 0.0 | BT067854.1 Zea mays full-length cDNA clone ZM_BFc0171J16 mRNA, complete cds. | |||
GenBank | EU956483 | 0.0 | EU956483.1 Zea mays clone 1564301 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451346.1 | 1e-176 | MADS-box protein SOC1 | ||||
TrEMBL | A0A1Z5RKP1 | 0.0 | A0A1Z5RKP1_SORBI; Uncharacterized protein | ||||
STRING | Si019985m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3805 | 16 | 16 | Representative plant | OGRP3872 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 1e-47 | AGAMOUS-like 20 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G003401.1.p |