PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G000800.1.p | ||||||||
Common Name | Sb04g000270, SORBIDRAFT_04g000270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 212aa MW: 22956.7 Da PI: 8.5916 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Sobic.004G000800.1.p 49 YPCSFCKREFRSAQALGGHMNVH 71 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.45E-6 | 46 | 75 | No hit | No description |
Pfam | PF13912 | 7.7E-7 | 49 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.094 | 49 | 76 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.007 | 49 | 71 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MDEREESSKK QLQQGASSSS RQQQQQAPAA SSSWSYSSCS FFTWPPRSYP CSFCKREFRS 60 AQALGGHMNV HRRDRARLRH GGSPPPAPPP PPAMMMMTTI PNLNYPPPHQ CHLHRPSSSK 120 KLLLDRDGDN KRPSTSSMEL ELGVGVLVCS NCNTAAAATS TTPTAHAPAG GGPEDADGDD 180 LDLELRLGVS SSSFHRHTHT YKAGRCMICN P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 4e-13 | 44 | 71 | 2 | 29 | superman protein |
2l1o_A | 4e-13 | 44 | 71 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G000800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021314441.1 | 4e-82 | zinc finger protein 2 | ||||
TrEMBL | C5XRG5 | 1e-154 | C5XRG5_SORBI; Uncharacterized protein | ||||
STRING | Sb04g000270.1 | 1e-145 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 8e-21 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G000800.1.p |
Entrez Gene | 8074151 |