PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G445800.1.p | ||||||||
Common Name | Sb03g047520, SORBIDRAFT_03g047520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GATA | ||||||||
Protein Properties | Length: 218aa MW: 23951.9 Da PI: 10.1916 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.1 | 3.3e-20 | 41 | 75 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++ Sobic.003G445800.1.p 41 CADCHTTKTPLWRGGPEGPKSLCNACGIRYRKRRR 75 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.3E-19 | 35 | 102 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.442 | 35 | 71 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.9E-13 | 36 | 74 | No hit | No description |
CDD | cd00202 | 2.90E-15 | 40 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.4E-16 | 40 | 75 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 41 | 66 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.2E-18 | 41 | 75 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MEVEMEVEMG TDPNPNPNPN PNTSPSAADD AATASGEAKA CADCHTTKTP LWRGGPEGPK 60 SLCNACGIRY RKRRRQALGL DAAAADSQQD QQQPKKKATA DPQQQDQHHL RKKAADPQQQ 120 DQHHLRKKAA AAATTDPQQQ DRKKAAAASS TNKKDKDKED NKKKKDQQVT VELRVVGFGK 180 EVMLKQRRRM RRKKCMSEEE RAAVLLMALS SGVIYAS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 74 | RKRRR |
2 | 155 | 164 | KDKEDNKKKK |
3 | 185 | 191 | QRRRMRR |
4 | 186 | 193 | RRRMRRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.17086 | 0.0 | callus| pollen |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G445800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU967444 | 7e-74 | EU967444.1 Zea mays clone 303140 GATA zinc finger family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459187.1 | 1e-159 | GATA transcription factor 15 | ||||
TrEMBL | C5XJF8 | 1e-157 | C5XJF8_SORBI; Uncharacterized protein | ||||
STRING | Sb03g047520.1 | 1e-158 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2418 | 38 | 92 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 4e-18 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G445800.1.p |
Entrez Gene | 8074146 |