PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G444000.1.p
Common NameSb03g047350, SORBIDRAFT_03g047350
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 355aa    MW: 38852.7 Da    PI: 4.489
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G444000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.1e-31141197258
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                           +Dgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+e+ +++++tYeg H h
  Sobic.003G444000.1.p 141 EDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERSTEEADTLVVTYEGLHLH 197
                           8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.578135200IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-28136198IPR003657WRKY domain
SuperFamilySSF1182901.96E-25138198IPR003657WRKY domain
SMARTSM007746.3E-35140199IPR003657WRKY domain
PfamPF031062.3E-24141197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEEDLLLLEA SVAVPPLAES INKYCWPNGS DFATTEELMM MSDLVDEAAL SSSPVQQQEE  60
EEPRRQRESM LNKLISTVYS GPTISDIESA LSFTGADQAA AVDAHIYNSA GPVVFSPEKV  120
LSKMENKYTL KIKTCGNGLA EDGYKWRKYG QKSIKNSPNP RSYYRCTNPR CNAKKQVERS  180
TEEADTLVVT YEGLHLHYTY SHFLQPQPQP QPQQPKKPKL GGPPPQPQPI IMLEDLDGPA  240
QQDITTCPLD ATAMAPAPPP AALCYLDDMF QKPAFFEEEL QQQHITNGGL LEDMVPLLVR  300
RPCSSTGATT TTTGSSTTSS SPQLAPSPDL STSSSVSWNP TSPYIDMAIL SNIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-191391971371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G444000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332401e-149BT033240.1 Zea mays full-length cDNA clone ZM_BFb0071M13 mRNA, complete cds.
GenBankBT0624331e-149BT062433.1 Zea mays full-length cDNA clone ZM_BFb0296J15 mRNA, complete cds.
GenBankKJ7275731e-149KJ727573.1 Zea mays clone pUT5433 WRKY transcription factor (WRKY120) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459179.10.0uncharacterized protein LOC8074138
TrEMBLC5XJE10.0C5XJE1_SORBI; Uncharacterized protein
STRINGSb03g047350.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-43WRKY DNA-binding protein 49