PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G429800.1.p
Common NameSb03g046170, SORBIDRAFT_03g046170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family SRS
Protein Properties Length: 361aa    MW: 36670.3 Da    PI: 7.8437
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G429800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.34.9e-691262922154
                DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqs 84 
                           +sg+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq +a+ s++++ ++      a +ask++r    ++q+
  Sobic.003G429800.1.p 126 GSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLAASGSASSSPATasaaavAVSASKKPR--LLSSQT 212
                           57889**********************************************999887655443333345544455555555..559999 PP

                DUF702  85 alsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                           ++s+t++s+a+++++++t+s          lP++v+++avf+cvrv+s++dge+e+aYq++v+i+Gh+fkG+LydqG+++
  Sobic.003G429800.1.p 213 TTSHTSTSNATTPRSFDTTSshqdasfrdsLPRQVRAPAVFKCVRVTSIEDGEDEYAYQATVTINGHLFKGFLYDQGPDD 292
                           99***************99999********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.4E-63129291IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.1E-27131173IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.2E-28243290IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MRQAAAMNYG MADVGMVVVA PAASFHHTHH HHHHHEAAAA AAAAAAAGDP IFPLLSGGPC  60
VLDPDAAAKS ASSGAPANAI QFWQPPPQSP SSAAAAAGAN PNPSASPFAY LKKPLPMLDA  120
GAGSSGSGAT TCQDCGNQAK KDCGHNRCRT CCKSRGFDCS THVKSTWVPA ARRRERQQLA  180
ASGSASSSPA TASAAAVAVS ASKKPRLLSS QTTTSHTSTS NATTPRSFDT TSSHQDASFR  240
DSLPRQVRAP AVFKCVRVTS IEDGEDEYAY QATVTINGHL FKGFLYDQGP DDGRHAATSN  300
DDSTAGVPNI SELHLGAASG SGAGGVREGG TSMAPTELYG GGGHHPHILG GSSSYGNTMN  360
*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}.
UniprotTISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G429800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9664980.0EU966498.1 Zea mays clone 294888 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312948.10.0protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK96e-64LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A1B6Q8B30.0A0A1B6Q8B3_SORBI; Uncharacterized protein
STRINGSb03g046170.11e-180(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-47Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]