PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G423900.1.p
Common NameSb03g045660, SORBIDRAFT_03g045660
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 460aa    MW: 49552.1 Da    PI: 6.8274
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G423900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS404.79.2e-124554541374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevs 88 
                           l++lLl+cA a  +g l +a+a+L+++  laspdgd+mqR+aa f+eALa+r +r +++l++al  p++ +  + +e + a++ f +++
  Sobic.003G423900.1.p  55 LIHLLLNCAAAAGAGRLDAANAALEHIAALASPDGDAMQRVAAAFAEALARRALRAWPGLCRALlLPRAGP--TPAELAVARRHFLDLC 141
                           689************************************************************95444444..588999999******* PP

                  GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                           P+l+++  +aNq +lea+e+e+ vH++D++    +QW+ Ll+ La+Rpegpp+lR+T+v++    +++ l +t+  L+k Ae+l+vpf+
  Sobic.003G423900.1.p 142 PFLRLAGAAANQSVLEAMESEKIVHVVDLGGADATQWLELLHLLAARPEGPPHLRLTAVHE----HRDVLTQTAMVLTKEAERLDVPFQ 226
                           *************************************************************....9*********************** PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.................................desvsleserdevLklvks 233
                           fn+ v++rle+l++e+Lrvk+gEalaV ++lqlh ll                                     +++s+ d++L ++++
  Sobic.003G423900.1.p 227 FNP-VVSRLEALDVESLRVKTGEALAVTSSLQLHCLLasdddssgkdghhhqssngkggdtnkrprspesG-VSPSTSRADAFLGALWG 313
                           ***.7************************************************************997532.223334799******** PP

                  GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                           lsPkvvvv+eqea+hn++++ erf+eal+yy+alfd+le+ +pr s er+ vEr llg+e++n+vac ga+rrerhe+l +W +r+e a
  Sobic.003G423900.1.p 314 LSPKVVVVTEQEASHNAAPLTERFVEALNYYAALFDCLESAAPRGSVERARVERWLLGEEVKNIVACDGADRRERHERLDRWAARMEGA 402
                           ***************************************************************************************** PP

                  GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           GF  vpls++a  qa++  +  + dg++v ee+g+++l+W+dr+++svSaWr
  Sobic.003G423900.1.p 403 GFARVPLSYYALLQARRAAQGLGCDGFKVREEKGAFFLCWQDRAIFSVSAWR 454
                           ***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.89329434IPR005202Transcription factor GRAS
PfamPF035143.2E-12155454IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MVQDEGSSSS VTSSSLHNFS TMPLHASPGA GAAASPTTPP WLARELRSDE RGLCLIHLLL  60
NCAAAAGAGR LDAANAALEH IAALASPDGD AMQRVAAAFA EALARRALRA WPGLCRALLL  120
PRAGPTPAEL AVARRHFLDL CPFLRLAGAA ANQSVLEAME SEKIVHVVDL GGADATQWLE  180
LLHLLAARPE GPPHLRLTAV HEHRDVLTQT AMVLTKEAER LDVPFQFNPV VSRLEALDVE  240
SLRVKTGEAL AVTSSLQLHC LLASDDDSSG KDGHHHQSSN GKGGDTNKRP RSPESGVSPS  300
TSRADAFLGA LWGLSPKVVV VTEQEASHNA APLTERFVEA LNYYAALFDC LESAAPRGSV  360
ERARVERWLL GEEVKNIVAC DGADRRERHE RLDRWAARME GAGFARVPLS YYALLQARRA  420
AQGLGCDGFK VREEKGAFFL CWQDRAIFSV SAWRGRRFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-624745611381Protein SCARECROW
5b3h_A5e-624745610380Protein SCARECROW
5b3h_D5e-624745610380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G423900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9565700.0EU956570.1 Zea mays clone 1566913 GRAS family transcription factor containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456925.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-168SCL3_ARATH; Scarecrow-like protein 3
TrEMBLC5XHT90.0C5XHT9_SORBI; Uncharacterized protein
STRINGSb03g045660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-122scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]