PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G411500.2.p
Common NameSb03g044590, SORBIDRAFT_03g044590
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 301aa    MW: 31729.7 Da    PI: 8.9515
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G411500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.61.4e-2230102171
              trihelix   1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                           rWt++e+l+Li+arr me+   +  + +  p+W++vs+++r++g+er+p qC+++w nl+++ kki ++e+k 
  Sobic.003G411500.2.p  30 RWTRHETLVLIQARRAMERGGLQlpAVRPRPKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEGKA 102
                           8*****************99987557799*****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0852389IPR017877Myb-like domain
SuperFamilySSF466894.63E-52790IPR009057Homeodomain-like
PfamPF138375.0E-103099No hitNo description
Gene3DG3DSA:1.10.10.602.3E-43088IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSANENSPPV EAAAAAAAAA ASTPRSRLPR WTRHETLVLI QARRAMERGG LQLPAVRPRP  60
KWAAVSAYCR RHGVERGPMQ CRKRWGNLSW DLKKIVAWEG KAVAGAGVGA AGDAQHESFW  120
DMRGDQRRAR QLPSSFDREV YDALVCGASA GGGVAAAVMP PDFGDGDLEG VYPQPPIMVM  180
PISVTESDQK KAGAAAAASD KNSTSSHHGG GGGGGFKDSD ATFVADQAEG TATATPPAAA  240
TAKASIEKQV IEALERGNRA LAQQLEAHRS MWDADREQRA ALLRAMDRVA DAVCRIADKL  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G411500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280310.0KJ728031.1 Zea mays clone pUT6171 trihelix transcription factor (THX11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311263.11e-168trihelix transcription factor ASR3
TrEMBLA0A1W0W1700.0A0A1W0W170_SORBI; Uncharacterized protein
STRINGSb03g044590.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-33Trihelix family protein