PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G406600.1.p
Common NameSb03g044160, SORBIDRAFT_03g044160
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family SBP
Protein Properties Length: 404aa    MW: 42123 Da    PI: 8.9417
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G406600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.6e-4197173278
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g++qrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+
  Sobic.003G406600.1.p  97 CSVQGCDADLSRCRDYHRRHKVCEAHSKTPVVTVAGQQQRFCQQCSRFHLLGEFDEVKRSCRKRLDGHNRRRRKPQP 173
                           **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.5E-3489158IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.05294171IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.28E-3995175IPR004333Transcription factor, SBP-box
PfamPF031102.1E-3097170IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDWDAKMLPA WDLGTVVGPS SSGGVGVGGG GALDLKLGAP TSSRVVATAA AAVGAAPTLP  60
SANHPPPPAP APAPAPSSSA PAKRPRPGHA QQAVPACSVQ GCDADLSRCR DYHRRHKVCE  120
AHSKTPVVTV AGQQQRFCQQ CSRFHLLGEF DEVKRSCRKR LDGHNRRRRK PQPDPLNPAG  180
LFGNHHGVTR FTSYPQLFTT SMAEPKWSVV KTETDVFQDQ YYPAVHLDGA GAGSLFHGKD  240
RKHFPFLTNH NNGGGDVAAA ALGCQPFTIT TTASSESSSK QSNGNCALSL LSDNPTPAQT  300
AMIPTAQPLG PAMQYGRLPG SGGGSGDVSL TGMSYMRVAD SRQASMLTTS SPSHTAVASP  360
GPATAAATQH QLQYHHGYYH VSGGEQGNNP DGAAIQALPF SSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-29971701184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18286KRPRP
2153170KRSCRKRLDGHNRRRRKP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G406600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560771e-112AK356077.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1029L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456859.10.0squamosa promoter-binding-like protein 2
SwissprotQ0JGI11e-122SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLC5XGC00.0C5XGC0_SORBI; Uncharacterized protein
STRINGSb03g044160.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-35SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]