PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G399166.1.p
Common NameSb03g043580, SORBIDRAFT_03g043580
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 479aa    MW: 51939.5 Da    PI: 4.6773
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G399166.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.61.2e-111149341
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                          i + + r   f +R++g+ KKA+EL  LCd+++a+++ +
  Sobic.003G399166.1.p 11 IGDARDRAKAFKRRKAGLVKKAKELAKLCDVDIALVVCA 49
                          5567788889************************99864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.1E-17181IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.773147IPR002100Transcription factor, MADS-box
SMARTSM004329.9E-14161IPR002100Transcription factor, MADS-box
CDDcd002662.72E-20381No hitNo description
PRINTSPR004041.0E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-121152IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MPRGKIEMSL IGDARDRAKA FKRRKAGLVK KAKELAKLCD VDIALVVCAG PDGGAPAVWE  60
SDPGVVIDRY RRLPADKRAK HTHLDYINGQ LGKEERRLDK KRRQGLKALA CPGEAVLKDM  120
DLEELLASID AALLATTERQ KALGVADDDG QQLGQQVSSL ADDDGQGGPS FVGGDDLDDI  180
QAWLDELMWD GAEPLPLNAS MMQPASGAIQ YNNGNDVDMV SNHQCQAQML PGNGENGHGQ  240
FPWRAYQPHT TVSHPDYHGF QSAGNNYVDM DEYSEMLVPS NANAYDGWYD QAWWGADDES  300
SCAAVAVLPA AAAAAYPSLD IAGNPAYMPP SHEHPSMAFG DLMDAGRHEY ETGCLADYLH  360
FQCPDASQHF GAKPEPLHYL TDMAQGIRYN NDLEAGSCSS GRAQLFAQSH SCSGTPQFRG  420
SEQSQGHQYQ DPGVQHFWVM EEPPRSTEDV ATASARARGG GTWANSGGLH QPWIPVYQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G399166.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1W0W1360.0A0A1W0W136_SORBI; Uncharacterized protein
STRINGSb03g043580.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Representative plantOGRP1278735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.16e-09AGAMOUS-like 92