PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G396600.1.p
Common NameSb03g043350, SORBIDRAFT_03g043350
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 278aa    MW: 29707.4 Da    PI: 4.8055
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G396600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-06251272122
                           EEETTTTEEESSHHHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                           + C+ C+ksFs+   L++H++ 
  Sobic.003G396600.1.p 251 HACKSCNKSFSSATGLESHQKA 272
                           67******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.78E-6240275No hitNo description
PROSITE profilePS5015711.281251277IPR007087Zinc finger, C2H2
PfamPF128746.2E-4253275No hitNo description
PROSITE patternPS000280253275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEFWGKEVKP GATVSCEVGN DLVIHLSQAA LGEPKKASEN VIVSVKIDDK KLVLGTLSVE  60
KHPQISCDLV FDKDFELSHN SKTASVFFCG YKSPVPQFES YSGEDSSDEE LETDHQIPRN  120
EISAAKVPVK GGIKVESSSS DDDDDDFTDS EMSDEDDSSD EDDVSTGDDS SDDSGSEEQT  180
PTPKKTDVVV GKKRAIQAEA PSGKKAKSEQ SAQKTGDKKV STHSAKQSSK TPDKSTKTPT  240
ADKKSPKSGS HACKSCNKSF SSATGLESHQ KAKKHEA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.59410.0embryo| leaf| pollen| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G396600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9455521e-123EU945552.1 Zea mays clone 277423 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458956.10.0histone deacetylase HDT3
TrEMBLC5XFK20.0C5XFK2_SORBI; Uncharacterized protein
STRINGSb03g043350.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-28histone deacetylase 3