PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.003G393600.2.p | ||||||||
Common Name | Sb03g043110, SORBIDRAFT_03g043110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 684aa MW: 75175.6 Da PI: 5.0937 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.5 | 2.4e-13 | 91 | 178 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ffkv+ ++++g + +p +fa+++ ++ + + led g +W+v+l + ++g ++ GWk+Fv ++ + g+f+vF+ + rs Sobic.003G393600.2.p 91 FFKVM--MGYFSEG-MDIPSPFARTIwDLA--G-SNIFLEDAFGLRWRVRL--CLRDGVLSFGHGWKNFVLDHAVSCGEFLVFRQIARS 171 77777..5566666.***********8444..2.26***************..88999999***********************98888 PP EE..EEEEE CS B3 89 efelvvkvf 97 f +v++f Sobic.003G393600.2.p 172 VF--TVQMF 178 88..77766 PP | |||||||
2 | B3 | 32.1 | 2e-10 | 613 | 678 | 30 | 97 |
..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 k++ k ++l+d+ r W v + + +++ + +GW + +++n+L++gD++ F+l+g+se ++ ++v+ Sobic.003G393600.2.p 613 KHGRKVVILKDPCMRLWPVLY--QCTPRFNGFITGWVDICRENRLQQGDTCEFELSGNSELSFQLQVR 678 3445689**************..66666655667**********************998887777665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-18 | 88 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-20 | 88 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.153 | 88 | 181 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.00E-16 | 89 | 178 | No hit | No description |
Pfam | PF02362 | 2.0E-10 | 91 | 178 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-11 | 91 | 181 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.024 | 587 | 681 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.57E-11 | 603 | 679 | No hit | No description |
SuperFamily | SSF101936 | 4.32E-13 | 605 | 674 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-11 | 613 | 675 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-8 | 613 | 677 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.53 | 619 | 679 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 684 aa Download sequence Send to blast |
MQPAMDAEVV GVAVKQEPEE IVAEADGDEE GEPEKVVVKR RRKKKTACDP HKKRACVDCT 60 KRCARIHGRP ASPSALPSSS NARPVPAVPS FFKVMMGYFS EGMDIPSPFA RTIWDLAGSN 120 IFLEDAFGLR WRVRLCLRDG VLSFGHGWKN FVLDHAVSCG EFLVFRQIAR SVFTVQMFAP 180 SAVERLYHCE KNKRQSRKRK PRQKTCSPSI QTVKVTKNSV KNSKKRLRTD DQQNGIRPRC 240 RKSKMAAEVC IDESDVPDSA SEPKCSDTSE RVPEAGAAEP QEISEAPAGH ECEVQGVLDG 300 EAKIADDSTI LGEDQSNHNA ISASIMQVST ANEIEPGEGL NLPTDFDASV PLAMMDLNEV 360 SIDDIFLSAD IYEFESDMCN PESFSVDLNM VEPITTGQTS GFSCLEDTPQ NHLSSMGDGH 420 RSLIPEAVLC IENKEMTDVL GTGTSYFVDS SVHDIDINAL PANEPPSFGE DNPSPQADAE 480 MHSNECGLSS CNKDKGNSLL PLMNKQTAHK EYSSMTTEQD KAQGGQCNMQ DSIRQHATEI 540 MSRSAKPHEL ADLRQNHLQT GNGSESIHSG ASESGGVLAL TTNSIEFCID VPAPGQTWLE 600 LPGRLPVLPR TKKHGRKVVI LKDPCMRLWP VLYQCTPRFN GFITGWVDIC RENRLQQGDT 660 CEFELSGNSE LSFQLQVRVP NTQ* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 38 | 44 | KRRRKKK |
2 | 38 | 53 | KRRRKKKTACDPHKKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.003G393600.2.p |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310776.1 | 0.0 | B3 domain-containing protein Os01g0905400 isoform X3 | ||||
Swissprot | Q5N6V0 | 0.0 | Y1054_ORYSJ; B3 domain-containing protein Os01g0905400 | ||||
TrEMBL | A0A1B6Q7R0 | 0.0 | A0A1B6Q7R0_SORBI; Uncharacterized protein | ||||
STRING | Sb03g043110.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24700.1 | 7e-09 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.003G393600.2.p |
Entrez Gene | 8078695 |
Publications ? help Back to Top | |||
---|---|---|---|
|