PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G393300.1.p
Common NameSb03g043080, SORBIDRAFT_03g043080
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARR-B
Protein Properties Length: 580aa    MW: 64700.2 Da    PI: 4.8439
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G393300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.61.8e-25195248155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Sobic.003G393300.1.p 195 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMSVPGLTRENVASHLQKYRL 248
                           68*******************.9*******************************8 PP
2Response_reg79.61.1e-26151231109
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl+vdD+p+ +++l+++l+k  y ev+++  ++ al++l+e++  +D+++ D++mp+mdG++ll+ i  e  +lp+i+++  ge + + 
  Sobic.003G393300.1.p  15 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLASVALQILRERRnkFDIVISDVNMPDMDGFKLLELIGLEM-DLPVIMMSIDGETSRVM 101
                           89*********************.***************888888**********************6644.8**************** PP

                           HHHHTTESEEEESS--HHHHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                           + ++ Ga d+l Kp+ ++el++
  Sobic.003G393300.1.p 102 KGVQHGACDYLLKPVRMKELRN 123
                           *******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.1E-1622570IPR017053Response regulator B-type, plant
SuperFamilySSF521721.71E-3412135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.5E-4312145No hitNo description
SMARTSM004484.3E-3113125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.54114129IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.3E-2415124IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.32E-2816128No hitNo description
SuperFamilySSF466895.64E-18192252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-28194253IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-22195248IPR006447Myb domain, plants
PfamPF002495.2E-7197247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MALTDATAFP YGLRVLVVDD DPTWLKILEK MLRKCSYEVT TCGLASVALQ ILRERRNKFD  60
IVISDVNMPD MDGFKLLELI GLEMDLPVIM MSIDGETSRV MKGVQHGACD YLLKPVRMKE  120
LRNIWQHVYR KKMHEVKEIE GNDSCDDLQI FRNGVEGFDE RGLFMRADSD TMRKRKDMDK  180
DHADQDSSDG ATVKKARVVW SVDLHQKFVN AVNQIGFDKV GPKKILDLMS VPGLTRENVA  240
SHLQKYRLYL SRLQKQNEER IMGAARQDFS HKGPSDNLNL RSSFEEQPGN LSNGFQHSSQ  300
KIQAQTNIPD PHLDDTKTSV PLKVPDKNGT SVSDAVDPQN ITSASPLSGV FSFERMPVNQ  360
DRKLSETMIL ECQSWSGSVP PKQFMQYPKH NHERCDLLGD YSCLPKPDLE HPIAPGHLYA  420
PAPVISMVEG DARNFSDVKP DLIACMKSLS PALTCTVESV SAQLSDSAVT STNSDQKFSS  480
VEGLSSIKDC DFDQERNQAT LLTSEEASII CGTDLTWLHD DLSGYQGVSF SNIGLNSIDL  540
FQCNDTMGAL PGLQNNWYDD IELSSETMEI QLLDGGLFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-17194253463ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.25630.0shoot
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G393300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9747740.0EU974774.1 Zea mays clone 457889 two-component response regulator ARR11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458941.10.0two-component response regulator ORR26
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLC5XFH10.0C5XFH1_SORBI; Two-component response regulator
STRINGSb03g043080.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-108response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]