PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G383400.1.p
Common NameSb03g042290, SORBIDRAFT_03g042290
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 531aa    MW: 54199.9 Da    PI: 6.9843
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G383400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-05113135123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C  Cgk Fs++     H+r+H
  Sobic.003G383400.1.p 113 FPCYVCGKGFSSRKAVDGHMRVH 135
                           89*******************99 PP
2zf-C2H214.20.00013342361120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           y+C+dCgk++s++  L  H 
  Sobic.003G383400.1.p 342 YSCKDCGKTYSTHQGLGGHA 361
                           99**********98886665 PP
3zf-C2H213.20.00027407429123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C++C+k+F +   L  H+r+H
  Sobic.003G383400.1.p 407 HACQKCHKVFATGVALGGHMRMH 429
                           67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-4111135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.99113135IPR007087Zinc finger, C2H2
SMARTSM003550.012113135IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-7340364No hitNo description
PfamPF139120.0086342364IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221342369IPR007087Zinc finger, C2H2
SMARTSM003551.4342364IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280344364IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-7402429No hitNo description
Gene3DG3DSA:3.30.160.608.4E-4404429IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-8407430IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596407434IPR007087Zinc finger, C2H2
SMARTSM003550.039407429IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280409429IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MDSSSRRPLS DLLGAGAGDD DLEEGEYVPS HYQSSSDSDT DDDDRFDHQS SYPQHGGRMR  60
RLEDIVAEGR VGAGAARLPP ASPTPSSESE GTISDHRSVS SGGGGGARPA RKFPCYVCGK  120
GFSSRKAVDG HMRVHGSGSG SGARHAVAFS GGWAATGRRG SIGGKSKPSA AVAASLDSES  180
TGHSTAVVAV QVQQPLEPVP MAFAATNLSP MPSSTRTNLS GEDDEGSSAA SATAQPVVHY  240
DEPVAAAAVV AVAVGANPSS TADGAGARAG PVDHQLAVAD QQAPAPQDHR QAVSVPPPAA  300
QKSQLTEQPL VPPPAAAPAA QLQQGGGQLV PLPRPAQPPR EYSCKDCGKT YSTHQGLGGH  360
AAGHKNRQRE QEAMAAAAGM MMMPHGGGGG AEFLAALRRG RKAEEPHACQ KCHKVFATGV  420
ALGGHMRMHY TGPPIVHKSK RRCVALVAAG QQQPPPPPAV TEADLRLALS AANTEEPSSS  480
AAPAMAGTGR LRLFGIDIGP LVQQAAPAPS EQQGSGTMED YSSAGEQQHK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G383400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458896.10.0zinc finger protein 316
TrEMBLC5XEQ80.0C5XEQ8_SORBI; Uncharacterized protein
STRINGSb03g042290.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Representative plantOGRP1012237