PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.003G381400.1.p | ||||||||
Common Name | Sb03g042110, SORBIDRAFT_03g042110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 32363.4 Da PI: 8.0671 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6e-19 | 103 | 152 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +g+++AeIrdp++ rkr +lg+f+taeeAa+a++ a+++l+g Sobic.003G381400.1.p 103 RFPGVRLRP-WGKFAAEIRDPRQ---RKRLWLGTFDTAEEAAAAYDDAALRLKG 152 689******.**********954...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-26 | 103 | 161 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-12 | 103 | 152 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-30 | 103 | 166 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.391 | 103 | 160 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.98E-13 | 103 | 161 | No hit | No description |
PRINTS | PR00367 | 1.1E-8 | 104 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-19 | 104 | 161 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-8 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MSSVDSLTSG RSRREGPPLP RPKRVHVYFV DADATDTDDS SGDEDERAKR RVREVIHIDV 60 EAASAPTRAA QALVLPKKRR LPSQAAASAL VRRRASGAGF RRRFPGVRLR PWGKFAAEIR 120 DPRQRKRLWL GTFDTAEEAA AAYDDAALRL KGSHVVTKFP AEAPSSPWSR TRLRPRREKP 180 LETAEGAAEE RQEAVASAPA PAPAAAPASL DPQAEDGTAL ICPFTSPTSV LRFAADEVPA 240 APALPAFEFL YSGLGELCDL GAATAPSKAA AAAEFDCLPW WEGEDFVTAT GLTASAGAAV 300 SVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-18 | 102 | 166 | 4 | 69 | ATERF1 |
3gcc_A | 6e-18 | 102 | 166 | 4 | 69 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.003G381400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975263 | 0.0 | EU975263.1 Zea mays clone 485995 AP2 domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021312343.1 | 0.0 | ethylene-responsive transcription factor CRF3 | ||||
TrEMBL | A0A1B6Q7E1 | 0.0 | A0A1B6Q7E1_SORBI; Uncharacterized protein | ||||
STRING | Sb03g042110.1 | 1e-163 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13140 | 22 | 26 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46310.1 | 3e-14 | cytokinin response factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.003G381400.1.p |
Entrez Gene | 8062443 |