PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G380900.1.p
Common NameSb03g042060, SORBIDRAFT_03g042060
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 192aa    MW: 19291.5 Da    PI: 10.2868
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G380900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.3e-162170255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          gykGVr+++ +g+Wv+eIr+p +   r r +lg++ t+e Aa a++ a   l+g
  Sobic.003G380900.1.p 21 GYKGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVYFLRG 70
                          8*****777.**********943...5*********************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.1782194IPR001471AP2/ERF domain
SMARTSM003806.9E-2021100IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-162172IPR016177DNA-binding domain
PfamPF008474.8E-92170IPR001471AP2/ERF domain
PRINTSPR003673.3E-82233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-222271IPR001471AP2/ERF domain
CDDcd000182.43E-162269No hitNo description
PRINTSPR003673.3E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MMRRAEPVGE AADAERRGRG GYKGVRRRRW GKWVSEIRVP GTRERLWLGS YATPEAAAVA  60
HDTAVYFLRG GTGAGAGTGA GVAGGGDVAA LNFPERAAAA YGTGAGAGAA GRLSPRSVQR  120
VASDAGMAAD AQLVAARESA PAPALAHAHR TGIGIGSAHD GGASAHARPG AGREQPAVSG  180
EINVDDMEIL M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G380900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9545303e-79EU954530.1 Zea mays clone 1469452 transcriptional factor TINY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456757.21e-128ethylene-responsive transcription factor ERF020
TrEMBLA0A1B6Q7F61e-127A0A1B6Q7F6_SORBI; Uncharacterized protein
STRINGSb03g042060.11e-126(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.13e-18ERF family protein