PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G373000.1.p

Common Name

Sb03g041360, SORBIDRAFT_03g041360

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

MYB

Protein Properties

Length: 270aa MW: 29093.2 Da PI: 9.0563

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G373000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl Sobic.003G373000.1.p 14 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.9	4.2e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T ++de++++++++lG++ W++Ia ++ gRt++++k++w+++ Sobic.003G373000.1.p 67 RGNFTDDDDEIIIKLHALLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.5E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.243	9	61	IPR017930	Myb domain
SMART	SM00717	4.1E-14	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.6E-29	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.59E-12	16	61	No hit	No description
PROSITE profile	PS51294	27.546	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	5.9E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	6.3E-15	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.09E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TDDDDEIIIK LHALLGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLSRG 120 IDPQTHRPLS GGAAAGSGLT TSSTAGFPAQ APAPTRPARP VIIIPPNVMF ARPAPSEDGH 180 SSSGGSTDAP RCPDLNLDLD LSVGPPCSPP KTPAAAVTTP TSQQQEMQRA TICLCYHLGV 240 RSGDACSCKT AASPAGFRFL RPLEEGQYI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-30	14	116	7	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G373000.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035447	0.0	BT035447.1 Zea mays full-length cDNA clone ZM_BFb0063G11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456719.1	0.0	myb-related protein 308
Swissprot	P81393	5e-96	MYB08_ANTMA; Myb-related protein 308
TrEMBL	C5XRB4	0.0	C5XRB4_SORBI; Uncharacterized protein
STRING	Sb03g041360.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	8e-87	myb domain protein 6

Link Out ? help Back to Top
Phytozome	Sobic.003G373000.1.p
Entrez Gene	8061001

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]